Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39120 249 / 5e-84 RmlC-like cupins superfamily protein (.1) AT5G39160 248 / 8e-84 RmlC-like cupins superfamily protein (.1.2.3) AT5G39150 248 / 9e-84 RmlC-like cupins superfamily protein (.1) AT5G39190 248 / 1e-83 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39180 248 / 2e-83 RmlC-like cupins superfamily protein (.1) AT5G39110 247 / 3e-83 RmlC-like cupins superfamily protein (.1) AT5G39130 247 / 3e-83 RmlC-like cupins superfamily protein (.1) AT4G14630 239 / 5e-80 GLP9 germin-like protein 9 (.1) AT3G05950 235 / 2e-78 RmlC-like cupins superfamily protein (.1) AT5G38940 232 / 2e-77 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042517 [exp] 407 / 2e-146 AT5G39160 251 / 4e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10000622 [exp] 278 / 3e-95 AT5G39130 307 / 7e-107 RmlC-like cupins superfamily protein (.1) Lus10006538 [exp] 273 / 2e-93 AT5G39120 313 / 3e-109 RmlC-like cupins superfamily protein (.1) Lus10006536 [exp] 265 / 5e-90 AT5G39150 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Lus10033767 [exp] 265 / 6e-90 AT5G39150 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Lus10003116 [exp] 264 / 8e-90 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10003114 [exp] 259 / 9e-88 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006543 [exp] 259 / 9e-88 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10003267 [exp] 229 / 7e-76 AT5G39130 257 / 4e-87 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G026200 [exp] 263 / 2e-89 AT3G05950 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Potri.019G026400 [exp] 262 / 3e-89 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026500 [exp] 262 / 3e-89 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026700 [exp] 261 / 7e-89 AT3G05950 286 / 1e-98 RmlC-like cupins superfamily protein (.1) Potri.019G025800 [exp] 261 / 9e-89 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025900 [exp] 261 / 9e-89 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026000 [exp] 261 / 9e-89 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.013G052000 [exp] 260 / 3e-88 AT5G39110 282 / 5e-97 RmlC-like cupins superfamily protein (.1) Potri.013G052100 [exp] 259 / 4e-88 AT5G39110 285 / 2e-98 RmlC-like cupins superfamily protein (.1) Potri.013G052300 [exp] 257 / 6e-87 AT5G39110 281 / 2e-96 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10021980 pacid=23160257 polypeptide=Lus10021980 locus=Lus10021980.g ID=Lus10021980.BGIv1.0 annot-version=v1.0 ATGAATCGACATGTTCAACACTACCTTTGCTCCCTTGCCTTGGCTCTATTCCTCTTTGATCACCTGTCTCCACTGATCCTCGTCTCAGCCGTCGATTCTG CTCCTCTCCAGGACTTCTGTGTCGCTGTCAATGACACCCAAAATAGTGTTTTTGTGAACGGGCATGTGTGCAAAGACCCGAAGAAAGTAACGGCAGATGA TTTCTTCCTGACGGGTCTGGATAGACCTGGTAACACTTCCAACCCGTTCGGGTCAAAGGTCACCCTCATCAACGTTGACAGGATTTCGGGGCTTAATACG CTGGGGATATCCCTGGCACGTGTTGACTACATCCCAAACGGTGGTTTAAACCCGCTCCATTACCACCCTCGAGCCACCGAGCTCTTTCTCGCGCTCGAGG GGATGTTTTATGTCGGGTTCATCGCTTCGAATCCGGACCGGTTGATTTCCAAAGTGCTGAAGCCTGGAGATTTGTTTGTTTTCCCCATTGGAAGTATCCA CTTTCAGTACAACATTGGGAAAACTCCAGGCAGGGCTGTTTCTGGGTTGAGCAGCCAGAACCCGGGTATTGTTGTGATCGCCAACGCCGTTTTCGGGTCA AACCCAAGCATTGACCCGAGTTTGCTCGCAGCTGCCTTTTGGGCGGACAAGGAGTTGGTGGAGGACTTACAGAAGAAATTCTAG
AA sequence Show only first row Show all	>Lus10021980 pacid=23160257 polypeptide=Lus10021980 locus=Lus10021980.g ID=Lus10021980.BGIv1.0 annot-version=v1.0 MNRHVQHYLCSLALALFLFDHLSPLILVSAVDSAPLQDFCVAVNDTQNSVFVNGHVCKDPKKVTADDFFLTGLDRPGNTSNPFGSKVTLINVDRISGLNT LGISLARVDYIPNGGLNPLHYHPRATELFLALEGMFYVGFIASNPDRLISKVLKPGDLFVFPIGSIHFQYNIGKTPGRAVSGLSSQNPGIVVIANAVFGS NPSIDPSLLAAAFWADKELVEDLQKKF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39160			RmlC-like cupins superfamily p...		Lus10021980 [exp]	0	1
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011830 [exp]	1.0	0.9950
					Lus10041164 [exp]	1.4	0.9927
AT5G09360		LAC14	laccase 14 (.1)		Lus10041067 [exp]	3.5	0.9801
AT1G78410			VQ motif-containing protein (....		Lus10023308 [exp]	3.7	0.9762
AT3G61680			alpha/beta-Hydrolases superfam...		Lus10009811 [exp]	4.0	0.9554
AT5G67550			unknown protein		Lus10025583 [exp]	5.2	0.9841
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021312 [exp]	5.9	0.9809
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10016991 [exp]	7.5	0.9817
AT1G20870			HSP20-like chaperones superfam...		Lus10018368 [exp]	9.9	0.9576
					Lus10014739 [exp]	14.8	0.9485

Compare expression of checked genes

Lus10021980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.