Plant FIBer expression Database

Lus10021982 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G04160 345 / 7e-109 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021983
[exp]
1068 / 0 AT3G04160 313 / 4e-96 unknown protein
Lus10042519
[exp]
983 / 0 AT3G04160 306 / 1e-93 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.019G029400
[exp]
524 / 3e-177 AT3G04160 397 / 1e-127 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0361 C2H2-zf PF05253 zf-U11-48K U11-48K-like CHHC zinc finger
Representative CDS sequence
>Lus10021982 pacid=23160268 polypeptide=Lus10021982 locus=Lus10021982.g ID=Lus10021982.BGIv1.0 annot-version=v1.0
ATGAACCCTTCTTCAGCTCCACTTCCCTATCATTCCCCATTCCCTTATCCCCCTCCTCCAAACCCTAACCCCTCCCCTAACATCTTCGTCCATCCTCTCC
GACCGCCGCCGCAGCAACAACCTCATCCGCCTCCTTACCAACTCCCACCTCCTCCGCAGCAACAACAACAACAATCACCACATTTCACCGCAGCTCCTCT
AGTTCGTGATGTCTCCTCTACGCTCTCCTCCCTAACTGAGCTCATATCTCTCTCGCTACAAACTCTCAGCTCACTCTCTTCCCTTATCGATTCAAAACCT
TCTCCCGTGAATTTGAATGATAAACATGTGCCTTGCCCTTACAATCCTCACCATCTTATGCCGCCGGAGTCTCTATTCATTCACACGCTTCGCTGCCCTT
CTCCGGTATGTGAGGATCCTACTTCTATTATTCAATCTCTTCACTACCTTAAGACTTTGGACTTGCAGTTCCAAGCTAGAACTCAATTTGACGAATCGTC
CGAGGAACGGAAGAATGGTGAACTCAGCCTATCATTGGATAGTTATTTCAAGGAGTTCGAGTCCAACTTCTTTTACAAAGATTGTCCAGGTGCTGTTAAC
TTCATCGAGTTGGAGAATTTAGGGAAATTTGTTACTTTACCAAGCGTTTTATCGGTGGAATGTGCCGATTCTTTTGGTTTTAGAGAGAGAAGGCCTGATG
GGTTTGACGGAAATAAGTTCGGAATTCTCTCATCTGAATTATGGACTATTACGAGAGAGGTTGAGGGTTGGGTTGATTATCCTACGCAGTACTCGTATGG
AGTAGTTTGTGGAGTTCTGAGGTTAAATGTGGTTAAGATGAATGAATTGAGTGGTTGGATTATCACGAATTCTCCTCATTTCGGTTGTGTTATTGATGCA
TACATGAGAGACCATATCTCAGTGCTTGTTGGTCTATGCCTGAAAGCAATTAGAAGGGAAGCTTTGGCCTTCGTGGGTTGTGATACGACCATTGAGAATT
TGAGTTTTCCATGTCCTGTATCTGTTGAAGCTTTAAAGTGGCTTGCATCTCAGCTCTCTATGTTATTTGGGGAGCTGAGTGCAAAAAGATTCACTATTAA
CACTTTTAAGCAATGCATACTGGATGCTGCTAAAGAGGCATTGTTGTTCTGTTTGAGTCCTGACTTCAAAGAAAGCTCCAAAGGGTTGGATGACAATAAA
AGTGAGACAAAGGATGGTAAGACTGAAGAGAGCACCCTTGAAGAATGTACGGAGCACGAAGAAGATAAGAAAGCTGAGGCAGATGGTGTTGTTGTGTCTC
AAGTAGCAGCTGCAGTGGCAGCATTGCAAGAGCGTTCTTTACTAGAGGCTAAAATTAAAGCTCTACGGAATTCTCGATTACTACCATCTTACCAACGGGC
AGTTGAGCATACTTATTTGACAACTAGAGCTGATGAAGAACGGAAAAAGCATGCGGACTACCGGCCCACTATTGAGCATGATGGCTTCCGCAAGCGATCA
ACAAACCAGGAAACAAGCAGGCCAAAGACGAAGGAGGAATTGTTAGCTGAGGAAAGAGATTACAAACGTCGGAGGATGTCATATCGTGGGAAAAAGTTAA
AAAGAACAACTCTGCAGGTGATGAGAGATATCATAGATGAATGCATGGAGGAAATCAAGCAATCGGGAGGCATCGGCTGCTATGATAAGGCGGCTGAGGA
AGTATGTGTTCCCGCCGAACCAATTAGTAACCTTGAGGTTTCTATGGATATTGGTGTGCATGCGCAAATAAATGGCAAATCCTCTAAAAAGACAACAGTA
ACTACTGATCATCACCAGAGACAATCCTACTCTCGGCATGACAAAAGATCTGCAACCTCTGAGGATACTCTGTACAAAGATAATGAGCGACTAGGACAAG
ACCATCACTACTATCGTACGGAACCTAGGAACATTGAGGGTCATGGGAGACGCGTCAGAGACCACTATACCAAGAGTCCAGAAAGGCAGGGAAAGCATGT
CCAGTCACATGAGTGGAACAGTCGTAGAACAGAACGGAATTCTGTGGAGTTGATCTGA
AA sequence
>Lus10021982 pacid=23160268 polypeptide=Lus10021982 locus=Lus10021982.g ID=Lus10021982.BGIv1.0 annot-version=v1.0
MNPSSAPLPYHSPFPYPPPPNPNPSPNIFVHPLRPPPQQQPHPPPYQLPPPPQQQQQQSPHFTAAPLVRDVSSTLSSLTELISLSLQTLSSLSSLIDSKP
SPVNLNDKHVPCPYNPHHLMPPESLFIHTLRCPSPVCEDPTSIIQSLHYLKTLDLQFQARTQFDESSEERKNGELSLSLDSYFKEFESNFFYKDCPGAVN
FIELENLGKFVTLPSVLSVECADSFGFRERRPDGFDGNKFGILSSELWTITREVEGWVDYPTQYSYGVVCGVLRLNVVKMNELSGWIITNSPHFGCVIDA
YMRDHISVLVGLCLKAIRREALAFVGCDTTIENLSFPCPVSVEALKWLASQLSMLFGELSAKRFTINTFKQCILDAAKEALLFCLSPDFKESSKGLDDNK
SETKDGKTEESTLEECTEHEEDKKAEADGVVVSQVAAAVAALQERSLLEAKIKALRNSRLLPSYQRAVEHTYLTTRADEERKKHADYRPTIEHDGFRKRS
TNQETSRPKTKEELLAEERDYKRRRMSYRGKKLKRTTLQVMRDIIDECMEEIKQSGGIGCYDKAAEEVCVPAEPISNLEVSMDIGVHAQINGKSSKKTTV
TTDHHQRQSYSRHDKRSATSEDTLYKDNERLGQDHHYYRTEPRNIEGHGRRVRDHYTKSPERQGKHVQSHEWNSRRTERNSVELI

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G04160 unknown protein Lus10021982
[exp]
0 1
AT5G60040 NRPC1 nuclear RNA polymerase C1 (.1.... Lus10000051
[exp]
1.0 0.8967
AT1G28690 Tetratricopeptide repeat (TPR)... Lus10015308
[exp]
1.4 0.8727
AT5G04895 DEA(D/H)-box RNA helicase fami... Lus10034126
[exp]
4.5 0.8596
AT5G42400 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7... Lus10016051
[exp]
6.3 0.8680
AT2G23740 C2H2ZnF AtCZS nucleic acid binding;sequence-... Lus10016788
[exp]
8.9 0.8677
AT1G64570 DUO3 DUO POLLEN 3, Homeodomain-like... Lus10002076
[exp]
11.6 0.8717
AT2G21090 Pentatricopeptide repeat (PPR-... Lus10004303
[exp]
13.7 0.8599
AT1G68930 pentatricopeptide (PPR) repeat... Lus10037799
[exp]
14.3 0.8320
AT3G19740 P-loop containing nucleoside t... Lus10040976
[exp]
16.5 0.8623
AT5G58450 Tetratricopeptide repeat (TPR)... Lus10042248
[exp]
23.1 0.8648

Lus10021982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.