Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04160 270 / 6e-80 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021982 [exp] 1078 / 0 AT3G04160 378 / 2e-121 unknown protein Lus10042519 [exp] 1032 / 0 AT3G04160 306 / 1e-93 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G029400 [exp] 451 / 2e-148 AT3G04160 397 / 1e-127 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [flax] [poplar] C2H2-zf PF05253 [flax] [poplar] zf-U11-48K U11-48K-like CHHC zinc finger
Representative CDS sequence Show only first row Show all	>Lus10021983 pacid=23160262 polypeptide=Lus10021983 locus=Lus10021983.g ID=Lus10021983.BGIv1.0 annot-version=v1.0 ATGAACCCTTCTTCAGCTCCACTTCCCTATCATTCCCCATTCCCTTATCCCCCTCCTCCAAACCCTAACCCCTCCCCTAACATCTTCGTCCATCCTCTCC GACCGCCGCCGCAGCAACAACCTCATCCGCCTCCTTACCAACTCCCACCTCCTCCGCAGCAACAACAACAACAATCACCACATTTCACCGCAGCTCCTCT AGTTCGTGATGTCTCCTCTACGCTCTCCTCCCTAACTGAGCTCATATCGCTCTCGCGGCCAACTCTCAGCTCACTCTCTTCCCTTATCGATTCAAAACCT TCTCCCGTGAATTTGAATGATAAACATGTGCCTTGCCCTTACAATCCTCACCATCTTATGCCGCCGGAGTCTCTATTCATTCACACGCTTCGCTGCCCTT CTCCGGTATGTGAGGATCCTACTTCTATTATTCAATCTCTTCACTACCTTAAGACTTTGGACTTGCAGTTCCAAGCTAGAACTCAATTTGACGAATCGTC CGAGGAACGGAAGAATGGTGAACTCAGCCTATCATTGGATAGTTATTTCAAGGAGTTCGAGTCCAACTTCTTTTACAAAGATTGTCCAGGTGCTGTTAAC TTCATCGAGTTGGAGAATTTAGGGAAATTTGTTACTTTACCAAGCGTTTTATCGGTGGAATGTGCCGATTCTTTTGGTTTTAGAGAGAGAAGGCCTGATG GGTTTGACGGAAATAAGTTCGGAATTCTCTCATCTGAATTATGGACTATTACGAGAGAGGTTGAGGGTTGGGTTGATTATCCTACGCAGTACTCGTATGG AGTAGTTTGTGGTGTTCTGAGGTTGAATGTGGTTAAGCTGAATAAATTGAGGGGTTGGATTATCACGAATTCTCCTCGTTTCGGTTGTGTTATTGATGCT TACATGAGAGACCATATCTCAGTGCTTGTTGGTCTATGCCTGAAAGCAATTAGAAGGGAAGCTTTGGCCTTCGTGGGTTGTGATACGACCATTGAGAATT TGAGTTTTCCATGTCCTGTATCTGTTGAAGCTTTAAAGTGGCTTGCATCTCAGCTCTCTATGTTATTTGGGGAGCTGAGTGCAAAAAGATTCACTATTAA CACTTTTAAGCAATGCATACTGGATGCTGCTAAAGAGGCATTGTTGTTCTGTTTGAGGCCTGACTTCAAAGAAAGCTCCAAAGGGTTGGATGACAATAAA AGTGAGACCAAGGATGGTAAGACTGAAGAGAGCACCCTTGAAGAATGTACAGAGCACGACAAAGATAAGAAAGCTGAGGCAGATGGTGTTGTTGTGTCTC AAGTAGCAGCTGCAGTGGCAGCATTGCAAGAGCGTTCTTTACTAGAGGCTAAAATTAAAGCTCTACGGAATTCTCGATTACTACCATCTTACCAACGGGC AGTTGAGCATACTTATTTGACAACTAGAGCTGATGAAGAACGGAAAAAGCATGCGGACTACCGGCCCACTATTGAGCATGATGGCTTCCGCAAGCGATCA ACAAACCAGGTGATGAGAGATATCATAGATGAATGCATGGAGGAAATCAAGCAATCGGGAGGCATCGGCTGCTATGATAAGGCGGCTGAGGAAGTATGTG TTCCCGCCGAACCAATTAGTAACCTTGAGGTTTCTATGGATATTGGTGAGCATGCGCAAATAAATGGCAAATCCTCTAAAGAGACAACAGTAACTACTGA TCATCACCAGAGACAATCCTACTCTCGGCATGACAAAAGATCTGCAACCTCTGAGGATACTCTGTACAAAGATAATGAGCGACTAGGACAAGACCATCAC TACTATCGTACGGAACCTAGGAACATTGAGGGTCATGGGAGACGCGTCAGAGACCACTATACCAAGAGTCCAGAAAGGCAGGGAAAGCATGTCCAGTCAC ATGAGTGGAACAGTCGTAGAACAGAACGGAATTCTGTGGAGTTGATAGGAGTCAAGCATCACATCAAGTCCACTAGTAACTCAAACAGTCGCAATGATAG ATCATCATCCCATGATGTCGTGGATTCTGATCACAGTCCCCATGTCGATAAGAAACATAAGGTATCTGATAAGAGGGACAGGCATGGAAGAAGCTCGTAC TCTCGTCATAGTTCAAGTCGAGCTGCACAAGGTTTTGAAGATAGATATGATCCAACAAAATCTCTTGATGCCTAG
AA sequence Show only first row Show all	>Lus10021983 pacid=23160262 polypeptide=Lus10021983 locus=Lus10021983.g ID=Lus10021983.BGIv1.0 annot-version=v1.0 MNPSSAPLPYHSPFPYPPPPNPNPSPNIFVHPLRPPPQQQPHPPPYQLPPPPQQQQQQSPHFTAAPLVRDVSSTLSSLTELISLSRPTLSSLSSLIDSKP SPVNLNDKHVPCPYNPHHLMPPESLFIHTLRCPSPVCEDPTSIIQSLHYLKTLDLQFQARTQFDESSEERKNGELSLSLDSYFKEFESNFFYKDCPGAVN FIELENLGKFVTLPSVLSVECADSFGFRERRPDGFDGNKFGILSSELWTITREVEGWVDYPTQYSYGVVCGVLRLNVVKLNKLRGWIITNSPRFGCVIDA YMRDHISVLVGLCLKAIRREALAFVGCDTTIENLSFPCPVSVEALKWLASQLSMLFGELSAKRFTINTFKQCILDAAKEALLFCLRPDFKESSKGLDDNK SETKDGKTEESTLEECTEHDKDKKAEADGVVVSQVAAAVAALQERSLLEAKIKALRNSRLLPSYQRAVEHTYLTTRADEERKKHADYRPTIEHDGFRKRS TNQVMRDIIDECMEEIKQSGGIGCYDKAAEEVCVPAEPISNLEVSMDIGEHAQINGKSSKETTVTTDHHQRQSYSRHDKRSATSEDTLYKDNERLGQDHH YYRTEPRNIEGHGRRVRDHYTKSPERQGKHVQSHEWNSRRTERNSVELIGVKHHIKSTSNSNSRNDRSSSHDVVDSDHSPHVDKKHKVSDKRDRHGRSSY SRHSSSRAAQGFEDRYDPTKSLDA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04160			unknown protein		Lus10021983 [exp]	0	1
AT1G22660			Polynucleotide adenylyltransfe...		Lus10026711 [exp]	1.4	0.8424
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10028521 [exp]	5.7	0.8126
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Lus10016712 [exp]	12.2	0.8376
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10033265 [exp]	14.7	0.8090
AT1G71420			Tetratricopeptide repeat (TPR)...		Lus10006073 [exp]	15.0	0.7694
AT1G16570			UDP-Glycosyltransferase superf...		Lus10031569 [exp]	17.6	0.7714
AT1G22660			Polynucleotide adenylyltransfe...		Lus10025499 [exp]	19.0	0.7898
AT1G48310		CHR18, CHA18	chromatin remodeling factor18 ...		Lus10039409 [exp]	22.4	0.7789
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Lus10038352 [exp]	26.2	0.7791
AT4G39680			SAP domain-containing protein ...		Lus10019680 [exp]	27.8	0.8011

Compare expression of checked genes

Lus10021983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.