Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18310 74 / 9e-17 unknown protein AT5G48500 55 / 1e-09 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042520 [exp] 297 / 3e-104 AT5G18310 81 / 1e-19 unknown protein Lus10020403 [exp] 62 / 2e-12 AT5G48500 127 / 7e-38 unknown protein Lus10009584 [exp] 58 / 1e-10 AT5G48500 126 / 3e-37 unknown protein Lus10006540 [exp] 50 / 4e-08 ND 37 / 0.002
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052600 [exp] 127 / 9e-38 AT5G18310 97 / 8e-26 unknown protein Potri.019G029600 [exp] 122 / 1e-35 AT5G18310 94 / 2e-24 unknown protein Potri.015G040500 [exp] 80 / 3e-20 AT5G18310 59 / 2e-12 unknown protein Potri.002G250800 [exp] 63 / 6e-13 AT5G48500 100 / 2e-27 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021984 pacid=23160288 polypeptide=Lus10021984 locus=Lus10021984.g ID=Lus10021984.BGIv1.0 annot-version=v1.0 ATGGAGGAGTGGAAGAGGAGCGGGCAGATACCAGCGTTCGGAGACTGGAAGAATGCCAACGAGCTTCCAATCACTCAGTACTTCGAGTGCGCTAGGCAAG CCGGGCTGATCCGTTACAGTAACTCCTCCGGCGAATGTGACTGCCCCGCCGCCGATTACCGTAATCGTCACCGTTCTTCATACGCCGCGGCTGATTTCAG CAAGAATCAGAAGCACCAATATCGCAACAACAACTACAATCAGCCACAGAGAAAGACAAGATTGAGGGAGAAGCGAGGCCAGGCGGCGCAAGTCAAGGAC GCGAAGCTTAACCATCATCAACACGGCAGAGTTCGTGACGTCACCAACCCAACTCGCCACCGAAAGAAACATTCCACTATCCAAAACGACGCCGTTCCCA CTCCCCCTTCCGCGGTTCAACGGCCCAGGAATCCGGTGAGAGCACCAAAGCCTGTCGACGAGGACCTGTACAAGATCCCACCTCATCTCCTCCGTTCTCC GAAAAGGGTATTTCTGACTAGTATCTTTCTGTTTGGTATTTCTGACTAG
AA sequence Show only first row Show all	>Lus10021984 pacid=23160288 polypeptide=Lus10021984 locus=Lus10021984.g ID=Lus10021984.BGIv1.0 annot-version=v1.0 MEEWKRSGQIPAFGDWKNANELPITQYFECARQAGLIRYSNSSGECDCPAADYRNRHRSSYAAADFSKNQKHQYRNNNYNQPQRKTRLREKRGQAAQVKD AKLNHHQHGRVRDVTNPTRHRKKHSTIQNDAVPTPPSAVQRPRNPVRAPKPVDEDLYKIPPHLLRSPKRVFLTSIFLFGISD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18310			unknown protein		Lus10021984 [exp]	0	1
AT4G39850		AtABCD1, ACN2, ...	PEROXISOME DEFECTIVE 3, COMATO...		Lus10041691 [exp]	5.1	0.6790
AT2G05755			Nodulin MtN21 /EamA-like trans...		Lus10035313 [exp]	8.5	0.7057
AT5G25930			Protein kinase family protein ...		Lus10005491 [exp]	10.4	0.6968
AT2G19710			Regulator of Vps4 activity in ...		Lus10040542 [exp]	11.4	0.6804
AT1G21010			unknown protein		Lus10035664 [exp]	19.4	0.7022
AT1G76600			unknown protein		Lus10037249 [exp]	19.9	0.7054
AT3G02100			UDP-Glycosyltransferase superf...		Lus10040533 [exp]	23.0	0.6716
AT4G27020			unknown protein		Lus10040054 [exp]	24.0	0.6147
AT1G48320			Thioesterase superfamily prote...		Lus10006220 [exp]	24.1	0.6932
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	24.9	0.6654

Compare expression of checked genes

Lus10021984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.