Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08530 256 / 2e-85 unknown protein AT5G09995 97 / 5e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042523 [exp] 459 / 6e-165 AT1G08530 263 / 2e-88 unknown protein Lus10035858 [exp] 100 / 1e-24 AT5G09995 214 / 1e-69 unknown protein Lus10016816 [exp] 96 / 4e-23 AT5G09995 216 / 4e-70 unknown protein Lus10042522 [exp] 96 / 5e-23 AT1G66370 181 / 7e-57 myb domain protein 113 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G052700 [exp] 301 / 7e-103 AT1G08530 277 / 1e-93 unknown protein Potri.019G030400 [exp] 291 / 9e-99 AT1G08530 266 / 1e-89 unknown protein Potri.007G081800 [exp] 98 / 4e-24 AT5G09995 246 / 5e-82 unknown protein Potri.010G003700 [exp] 45 / 9e-06 AT5G09995 49 / 3e-07 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10021985 pacid=23160265 polypeptide=Lus10021985 locus=Lus10021985.g ID=Lus10021985.BGIv1.0 annot-version=v1.0 ATGGAAGACTTTACTGCGGGATTCGACGCCGGCGAGGGGATGATAGAGTTTCCAGCGGCGGCCGGATTCGGGCTCGACTACGATGAGGACGAGAGCTGCA GCAGCAAGTGGGATTGGGATGAGTTGATCCGTGACATGGATCTCTGGCTCTCGAATCTTCCCAACCTCCGCCATTGCCCCAAACCTCCTCGCTTCATCGC TATCGGCGCTTCCAATCCCACAAAACGATCCCCATCGGTCGCCGGAGCTCAATCGCACAACGAATTTGACGAATTTTTTAGGGGCGAGGATGGGTGGGAG AGGGATTTGAAAGTGCAAGTGGGAAATGCCGTAGTTCCCTCGTTTATTACGCCATGGACGAAGCTCAGTTTGAACGATCAGGCCTCCTTCCTTCTGACCT TCGCCGCCTGCACGACATCTGTAGCGTTCACAAGTCTTGTGGTTGCTTCTATCCCTACGCTTCATGCAATGGGGAGGGCTGCAGTGTCACTGTCAAAGCT TGCAGATACAGCTCGTGATGAACTTCCAAGTACAATGGCTGCGGTTCGGCTGTCAGGCATGGAGATCAGTGATCTTACACTTGAGTTGAGTGATCTCAGC CATGAGATAACTGAAGGGGTGAACAAATCTGCTAAAACGGTCCAAGCAGCCAAAGCTGGAATCGGCCAGATTGGTACACTAGCTCATCAACATACAATCT CGATGATTGAAGAACGAGCCAATCTCCCCGAAATCTCCCTGCAACCGGTTGTGGTCGGAGCAGCAAAGAAGACTTCTCGTGCAGTTGGCCGGGCGACCAA GAGCTTGCTCAATATGATCTCTGGAGGTGAAAGGGAGAATGAAACTGGAGTTCAGAGGGTAGAAAAATAA
AA sequence Show only first row Show all	>Lus10021985 pacid=23160265 polypeptide=Lus10021985 locus=Lus10021985.g ID=Lus10021985.BGIv1.0 annot-version=v1.0 MEDFTAGFDAGEGMIEFPAAAGFGLDYDEDESCSSKWDWDELIRDMDLWLSNLPNLRHCPKPPRFIAIGASNPTKRSPSVAGAQSHNEFDEFFRGEDGWE RDLKVQVGNAVVPSFITPWTKLSLNDQASFLLTFAACTTSVAFTSLVVASIPTLHAMGRAAVSLSKLADTARDELPSTMAAVRLSGMEISDLTLELSDLS HEITEGVNKSAKTVQAAKAGIGQIGTLAHQHTISMIEERANLPEISLQPVVVGAAKKTSRAVGRATKSLLNMISGGERENETGVQRVEK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08530			unknown protein		Lus10021985 [exp]	0	1
AT2G31810			ACT domain-containing small su...		Lus10025595 [exp]	5.3	0.7917
AT5G38830			Cysteinyl-tRNA synthetase, cla...		Lus10010336 [exp]	5.7	0.7997
AT2G15290		ATTIC21, TIC21,...	PERMEASE IN CHLOROPLASTS 1, CH...		Lus10014100 [exp]	6.2	0.7961
AT3G61530		PANB2	Phosphoenolpyruvate carboxylas...		Lus10010142 [exp]	6.2	0.8102
AT1G66670		NCLPP3, NCLPP4,...	CLP protease proteolytic subun...		Lus10010979 [exp]	13.9	0.7893
AT3G02900			unknown protein		Lus10009524 [exp]	16.1	0.7345
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10041383 [exp]	18.0	0.7237
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10012264 [exp]	18.1	0.7773
AT3G25700			Eukaryotic aspartyl protease f...		Lus10034270 [exp]	18.5	0.7414
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Lus10026369 [exp]	21.1	0.7225

Compare expression of checked genes

Lus10021985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.