Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08550 595 / 0 AVDE1, NPQ1 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2) AT2G21860 63 / 2e-10 violaxanthin de-epoxidase-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042524 [exp] 892 / 0 AT1G08550 592 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2) Lus10032756 [exp] 64 / 9e-11 AT2G21860 699 / 0.0 violaxanthin de-epoxidase-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G053100 [exp] 622 / 0 AT1G08550 585 / 0.0 ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, non-photochemical quenching 1 (.1.2) Potri.005G085800 [exp] 63 / 3e-10 AT2G21860 700 / 0.0 violaxanthin de-epoxidase-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0116 [flax] [poplar] Calycin PF07137 [flax] [poplar] VDE VDE lipocalin domain
Representative CDS sequence Show only first row Show all	>Lus10021986 pacid=23160228 polypeptide=Lus10021986 locus=Lus10021986.g ID=Lus10021986.BGIv1.0 annot-version=v1.0 ATGGAGTCAGCTGCTCTATTTCATTCCCTTTCTTTGGATGATAGTGAACTAAGCTACGGAGGCTTAAAAGTGAAAACAATGGAATTAGCTTGGAAAACCA TTCATTTGCCTCGTGATGACGTTCTTGGTGTATCCTACGCTGCGAATGGCGAAACCACCTACCGAAAGAAGGTCCAGCTGGGGCGCCATTGTTGCAGTTT ACTTCTGATGAAAATTTCTCAGCACAGTAGAACGAACCCCAGAAAACTTCATTTGACATGTTCTCACAAATTGCATCATGCTGATGTGGAAGTTAGTAGC TCTTGGAGAAGGAAGCTGGATTCGAGTTCTAGTACCGGTACAGCCATGCCCAAGGCGAAGCAGATACTCGAGTCCCTCTTCTCGAGAACGAAAAATGTCA TGAAACACAAGAGCATGGAAGTGTTGGGAATACTGGCATTTTCATTGTTGGTCATTCCATCTTCAGCTGATGCTGTTGATGCTCTCAAAACTTGCGCATG CTTGCTGAAGGAATGCAGGCCAGAATTCGCAAAGTGCATCTCGAATCCCTCTTGCGCAGCGAATATTGCTTGCCTCCAGACCTGCAATAACCGGCCCGAT GAAACTGAATGCCAGATCAAATGTGGAGATCTGTTTGAGAACAGTGTTGTGGATCAGTTCAACGAGTGTGCAGTCTCGCGAAAAAAGTGCGTGCCTCGGA AATCTGATGTTGGGGACTTCCCAGTCCCTGATCCCGCTGTTCTTGTTAAGAGCTTCAACATTTCAGACTTCAGCGGCAAATGGTTTATAACAAGTGGCCT AAATCCTAGTTTCGACACTTTCGACTGCCAAGTGCACGAGTTTCACACCGAAGAAGGCAACAGGCTCGTGGGGAACATATCATGGAGGATAAAATATCCA GATGGAAGTTTCATCACTCGTACAGCAGAGCAGAAGTTTTTGCAGGATCCAAACCAGCCTGGAGCACTTTACAACCATAATAATGAGTACCTTCACTATG AAGATGACTGGTACATCCTCTCTTCGAAGATCGAGAACAAGGCCAACGACTACATATTCGTATATTATCGGGGGAAGAACGACGCATGGGATGGCTATGG TGGTGCAGTTATCTACACAAGGAGTTCAGTCTTACCTGAAAGCATCGTACCTGAGCTCGAGAGAGCAGCTAAGAGTGTGGGACGGGACTTCAGCAAGTTC ATTCGAACAGATAATACGTGCGGCCCCGAGCCTGCTCTTGTGGAGAGGCTGGAGAAGACAGTGGAGGAAGGTGAGAAGACCATTATAAGAGAGGTTGAAG AGATAGAAGGACAAGTCCTCGAGGCGGAGAAGACCGAATTGACATTGTTGCAGAGATTGACAGAAGGATTCAAAGAGCTCCAGCAGGATGAGGAGTACTT CTTGAGAGAGCTGAGTAGGGAGGAGATGGACATTTTGAATGGCCTGCAGATGGAAGCTAATGAACTGGAGAAGCTCTTTGGAAATGCTCTGCCAATCAGG AAGTTAAGATAG
AA sequence Show only first row Show all	>Lus10021986 pacid=23160228 polypeptide=Lus10021986 locus=Lus10021986.g ID=Lus10021986.BGIv1.0 annot-version=v1.0 MESAALFHSLSLDDSELSYGGLKVKTMELAWKTIHLPRDDVLGVSYAANGETTYRKKVQLGRHCCSLLLMKISQHSRTNPRKLHLTCSHKLHHADVEVSS SWRRKLDSSSSTGTAMPKAKQILESLFSRTKNVMKHKSMEVLGILAFSLLVIPSSADAVDALKTCACLLKECRPEFAKCISNPSCAANIACLQTCNNRPD ETECQIKCGDLFENSVVDQFNECAVSRKKCVPRKSDVGDFPVPDPAVLVKSFNISDFSGKWFITSGLNPSFDTFDCQVHEFHTEEGNRLVGNISWRIKYP DGSFITRTAEQKFLQDPNQPGALYNHNNEYLHYEDDWYILSSKIENKANDYIFVYYRGKNDAWDGYGGAVIYTRSSVLPESIVPELERAAKSVGRDFSKF IRTDNTCGPEPALVERLEKTVEEGEKTIIREVEEIEGQVLEAEKTELTLLQRLTEGFKELQQDEEYFLRELSREEMDILNGLQMEANELEKLFGNALPIR KLR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Lus10021986 [exp]	0	1
AT1G76450			Photosystem II reaction center...		Lus10030719 [exp]	1.0	0.9659
AT2G34860		EDA3	embryo sac development arrest ...		Lus10024221 [exp]	3.0	0.9561
AT1G51110			Plastid-lipid associated prote...		Lus10010444 [exp]	3.5	0.9580
AT1G07110		FKFBP, ATF2KP, ...	"fructose-2,6-bisphosphatase",...		Lus10031869 [exp]	4.0	0.9461
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10011035 [exp]	4.9	0.9224
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10031537 [exp]	5.3	0.9417
AT2G34860		EDA3	embryo sac development arrest ...		Lus10023593 [exp]	5.9	0.9443
AT2G32640			Lycopene beta/epsilon cyclase ...		Lus10015143 [exp]	6.3	0.9242
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Lus10043252 [exp]	6.7	0.9343
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Lus10027576 [exp]	7.1	0.9214

Compare expression of checked genes

Lus10021986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.