Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15870 835 / 0 glycosyl hydrolase family 81 protein (.1) AT1G18310 721 / 0 glycosyl hydrolase family 81 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042526 [exp] 558 / 0 AT5G15870 440 / 6e-149 glycosyl hydrolase family 81 protein (.1) Lus10042525 [exp] 499 / 5e-175 AT5G15870 367 / 2e-123 glycosyl hydrolase family 81 protein (.1) Lus10038600 [exp] 78 / 1e-15 AT1G18310 50 / 4e-07 glycosyl hydrolase family 81 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G105300 [exp] 950 / 0 AT5G15870 897 / 0.0 glycosyl hydrolase family 81 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [flax] [poplar] Gal_mutarotase PF03639 [flax] [poplar] Glyco_hydro_81 Glycosyl hydrolase family 81 N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10021987 pacid=23160303 polypeptide=Lus10021987 locus=Lus10021987.g ID=Lus10021987.BGIv1.0 annot-version=v1.0 ATGGCTCCTTTGAAACCATCATTCCCATATCTATTCCCTCAGCAGAACTCCACAGTCCTCCCGGACCCTTCACGCTTCTTCTCCCCTTCCCTCCTCTCTT CCCCACTCCCAACCAACTCCTTCTTCCAGAACTTCACCCTCAAGAATGGCGATCAGCCTGAATACATCCATCCTTACCTCATCAAATCCTCCGAGTCCTC CCTTTCAATCTCCTATCCATCTCTCTTCCACAACTCTTCCTTCACTTACCAGGCCTTCACCGCCGATCTCACCATCTCCGGTGATACACCTACCCAGAAT CAGTCTTCTCATCTCATCACTTCCTACAGCGACCTCAGCGTCACTCTCGATTTCCCATCTTCCAATCTCCGATTCTTCCTCGTCCGCGGAAGCCCCTTCG TCACTTGCTCCGTCGCCGATAAGAAAAATAAAACCCTAATTTCAATCTCAACAATCCACGCCATTCTTTCCTGCTCTCCCACCTCCAATTCCCTCAACAA ATACACCGTCAAGCTCAACAGCAATCAAACCTGGCTAATCTATTCCTCCTCTCCCATCGTCAATCTCACCTACACTCCTTCTTCAATCTCCATCGCCGGC TTCTCCGGCATCCTGAGGATCGCCGTACTCCCCGACGAATCGGATCCAGATTCCGAATCAATCCTCGATCGGTTCAGCTCCTGCTACCCTATCTCAGGTG TCGCTGATTTCACGAAACCCTTCTCTGTTCAATACAAATGGGAAAAGAAAGGATGGGGGGATTTGCTTATGCTTGCGCATCCCTTGCATCTCAAGCTTTT ATCTGCTGACGTCGATTCCGACGTCACCATATTGGATGGGTTGAAGTACAGGAGTATGGACGGCGAGCTCGTCGCCGTCGTCGGAGACTCGTGGTTATTG AAATCGGATCCTATTTCCGTCACCTGGCATGCGATTAAAGGTATCCGAGACGATTCCTATAATGAAATTGTTGATGCGCTTTGCAAGGATGTCGACGGAT TGAATGCAGCCGCCATAGCTGCCACGACGTCGTCTTACTTCTACGGGAAGTTGATTGCGAGGGGAGCTAGATTGGCGTTGATAGCTGAGGAAGTTGGGTT TCCTGATGTAATTCCATCGGTGAGGAAGTTTTTAAAGGAAGCGATTGAGCCATGGTTGAATGGGACATTTAACGGGAATGGATTTCTGTACGATGGAAAA TGGGGTGGCATTGTCACGAAACAGGGGTTAACTGATTCAGGTGCTGATTTCGGATTCGGAATCTACAATGATCACCATTTCCATCTAGGTTATTTTCTCT ACGGGATTGCAGTTCTTGCGAAGATCGATCCTGCTTGGGGGAGAAAGTACAGGCCGCAAGCTTACTCATTAATGGCTGATTTTATGAACTTGGGGAAGCG ATCTGATTCGAGATACACACGTCTGAGGTGCTTTGATTTGTACAAGCTGCATTCTTGGGCTGGAGGGCTGACTGAATTCGCGGATGGACGAAATCAGGAG AGTACAAGTGAAGCTGTGAATGCATACTATTCCGCAGCTTTGATGGGTTTAGCTTATGGGGACACTCATCTTATAGCACTTGGATCTGCTCTTGCTGCAA TGGAGATTCAAGCTGCTCAGACATGGTGGCATGTGAAGGAAGGTGATAAAATCTATGCACCAGATTTCACATCCGAGAACAGAGTTGTGGGTGTGCTTTG GTCTACCAAAAGGGATAGCGGGCTATGGTTTGCTCCTCCGGAATGGAAAGAGTGTAGGCTTGGTATTCAGGTGCTGCCCTTGTTGCCGATCACCGAAGTT TTGTTCTCTGATATTCGGTTTACGAGACAGCTTGTGGATTGGACATTGCCGGCTTTAGCGAGGGAAGGTGTTGGAGAAGGATGGAAAGGGTTTGTGTATG CATTGGAAGCTGTCTATGATAAAGGGAGTGCTTTGGAGAAGACTAAGAGGTTGAACGGTCATGATGATGGAAATTCTTTGACTAATATGCTGTGGTGGAT TCATAGTAGAGATGATGATGAAGAGGAGAGAAGAATGTCAGGGTGTGAGGATGGTGGGAAGTTCTGCTGGTTTGGTCATTACTGTCACTGA
AA sequence Show only first row Show all	>Lus10021987 pacid=23160303 polypeptide=Lus10021987 locus=Lus10021987.g ID=Lus10021987.BGIv1.0 annot-version=v1.0 MAPLKPSFPYLFPQQNSTVLPDPSRFFSPSLLSSPLPTNSFFQNFTLKNGDQPEYIHPYLIKSSESSLSISYPSLFHNSSFTYQAFTADLTISGDTPTQN QSSHLITSYSDLSVTLDFPSSNLRFFLVRGSPFVTCSVADKKNKTLISISTIHAILSCSPTSNSLNKYTVKLNSNQTWLIYSSSPIVNLTYTPSSISIAG FSGILRIAVLPDESDPDSESILDRFSSCYPISGVADFTKPFSVQYKWEKKGWGDLLMLAHPLHLKLLSADVDSDVTILDGLKYRSMDGELVAVVGDSWLL KSDPISVTWHAIKGIRDDSYNEIVDALCKDVDGLNAAAIAATTSSYFYGKLIARGARLALIAEEVGFPDVIPSVRKFLKEAIEPWLNGTFNGNGFLYDGK WGGIVTKQGLTDSGADFGFGIYNDHHFHLGYFLYGIAVLAKIDPAWGRKYRPQAYSLMADFMNLGKRSDSRYTRLRCFDLYKLHSWAGGLTEFADGRNQE STSEAVNAYYSAALMGLAYGDTHLIALGSALAAMEIQAAQTWWHVKEGDKIYAPDFTSENRVVGVLWSTKRDSGLWFAPPEWKECRLGIQVLPLLPITEV LFSDIRFTRQLVDWTLPALAREGVGEGWKGFVYALEAVYDKGSALEKTKRLNGHDDGNSLTNMLWWIHSRDDDEEERRMSGCEDGGKFCWFGHYCH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15870			glycosyl hydrolase family 81 p...		Lus10021987 [exp]	0	1
AT5G10530			Concanavalin A-like lectin pro...		Lus10029553 [exp]	1.0	0.9021
AT5G02090			unknown protein		Lus10024357 [exp]	1.4	0.8849
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Lus10011748 [exp]	3.5	0.8759
AT4G27270			Quinone reductase family prote...		Lus10020076 [exp]	4.2	0.8677
AT3G04350			Plant protein of unknown funct...		Lus10000813 [exp]	4.5	0.8508
AT2G20740			Tetraspanin family protein (.1...		Lus10039817 [exp]	4.6	0.8760
AT1G18720			Protein of unknown function (D...		Lus10030447 [exp]	5.2	0.8519
AT2G01850		ATXTH27, EXGT-A...	XYLOGLUCAN ENDOTRANSGLUCOSYLAS...		Lus10013240 [exp]	5.7	0.8556
AT5G17280			unknown protein		Lus10028356 [exp]	7.2	0.8333
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10033105 [exp]	8.7	0.8292

Compare expression of checked genes

Lus10021987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.