Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08560 389 / 1e-136 KN, ATSYP111, SYP111 KNOLLE, syntaxin of plants 111 (.1) AT1G61290 281 / 3e-94 ATSYP124, SYP124 syntaxin of plants 124 (.1) AT4G03330 271 / 4e-90 ATSYP123, SYP123 syntaxin of plants 123 (.1) AT1G11250 261 / 3e-86 ATSYP125, SYP125 syntaxin of plants 125 (.1) AT3G11820 258 / 1e-84 PEN1, AT-SYR1, ATSYR1, ATSYP121, SYP121 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) AT3G52400 246 / 7e-80 ATSYP122, SYP122 syntaxin of plants 122 (.1) AT2G18260 215 / 2e-68 ATSYP112, SYP112 syntaxin of plants 112 (.1) AT3G03800 213 / 2e-67 ATSYP131, SYP131 syntaxin of plants 131 (.1) AT5G08080 202 / 2e-63 ATSYP132, SYP132 syntaxin of plants 132 (.1.2.3) AT5G16830 45 / 3e-05 ATSYP21, ATPEP12, SYP21, PEP12P syntaxin of plants 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042527 [exp] 583 / 0 AT1G08560 391 / 2e-137 KNOLLE, syntaxin of plants 111 (.1) Lus10018441 [exp] 282 / 1e-94 AT1G61290 491 / 4e-177 syntaxin of plants 124 (.1) Lus10011244 [exp] 279 / 2e-93 AT1G61290 487 / 2e-175 syntaxin of plants 124 (.1) Lus10006735 [exp] 272 / 1e-90 AT1G61290 491 / 3e-177 syntaxin of plants 124 (.1) Lus10021263 [exp] 267 / 6e-88 AT3G11820 436 / 3e-154 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10013589 [exp] 263 / 9e-87 AT3G11820 437 / 2e-155 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10016173 [exp] 263 / 1e-86 AT3G11820 432 / 2e-152 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10029373 [exp] 260 / 1e-85 AT3G11820 441 / 4e-157 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Lus10020089 [exp] 261 / 2e-85 AT1G61290 467 / 2e-166 syntaxin of plants 124 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G053200 [exp] 490 / 2e-176 AT1G08560 430 / 8e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.019G030800 [exp] 479 / 3e-172 AT1G08560 431 / 3e-153 KNOLLE, syntaxin of plants 111 (.1) Potri.004G035400 [exp] 283 / 4e-95 AT1G61290 490 / 8e-177 syntaxin of plants 124 (.1) Potri.011G043700 [exp] 280 / 9e-94 AT1G61290 456 / 3e-163 syntaxin of plants 124 (.1) Potri.006G202200 [exp] 265 / 1e-87 AT3G11820 412 / 3e-145 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.016G068600 [exp] 260 / 6e-86 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2) Potri.009G117900 [exp] 257 / 4e-85 AT2G18260 298 / 4e-101 syntaxin of plants 112 (.1) Potri.007G023100 [exp] 255 / 5e-84 AT2G18260 352 / 3e-122 syntaxin of plants 112 (.1) Potri.005G121300 [exp] 232 / 3e-75 AT2G18260 356 / 6e-124 syntaxin of plants 112 (.1) Potri.019G036700 [exp] 222 / 5e-71 AT3G03800 391 / 1e-137 syntaxin of plants 131 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0445 [flax] [poplar] SNARE-fusion PF00804 [flax] [poplar] Syntaxin Syntaxin CL0445 [flax] [poplar] PF05739 [flax] [poplar] SNARE SNARE domain
Representative CDS sequence Show only first row Show all	>Lus10021988 pacid=23160225 polypeptide=Lus10021988 locus=Lus10021988.g ID=Lus10021988.BGIv1.0 annot-version=v1.0 ATGAATGATTTGATGACGAAATCTTGGACCAGCTACGCGGATCTCAAGAAAGAGGCCATGAAAGATCTGGAAGCGGATCTGGAGATGGGAAATGTCTCAA ACTCCATGGACAACAACCTGGGGCTGTTCCTCGTGGAAGCAGATGCCGTGCAGAAGGAGATGGAATCAATCAAAGAACTTCTGTTTCATCTCCAGGAAAC CAACGACGAGAGCAAATCTCTCCACAAGCCAGAAACTCTGAAGTCCCTCCGCGAACAGATCAATTCAGACATCATGACTGTTCTCAAGAAGGCCAAAGCA ATCAAATCCCAGTTAGAAGAAATGGACCGTGCAAACGCTTCCAACAGGCGGCTCTCCGGTTTCAAGGAAGGAACTCCGATTTACCGAACCAGAGTTGCAG TCACCAACGGGTTGAGGAAGAAGTTGAAGGAGCTGATGGTGGATTTTCAAGCGTTGAGGCAGAGGATGATGACAGAGCATAAGGAAACTGTCGGGAGGAG GTACTTTACTGTTACTGGAGAGTATCCAGATGAGGAAGTGATTGAGAAGATCATATCAGATGGTCATAACGGTGAGCAGTTTCTGAAACGTGCGATTCAG GAGCATGGGAGAGGGAAAGTGTTGGAGACTGTGGTGGAGATACAGGACAGGCATGATGCTGCTAAGGAGATTGAGAGGAGTCTTTTGGAGCTTCATCAGG TGTTTATGGATATGGCGGTTATGGTGGAGACTCAAGGTGAGAAGCTGGATGATATTGAGCATCATGTTTTGAATGCGAGCCATTATGTGAAGGATGGGAC TAAAGAATTGAAGACTGCGAAAGATTACCAGAGGGGTGGGAGGAAGTGGATGTGCATTGGGGTTATTCTTCTGTTGCTGATTGTGCTTTTGATTGTCATT CCTATTGCTACCAGCTTTAGTCACTCTTGA
AA sequence Show only first row Show all	>Lus10021988 pacid=23160225 polypeptide=Lus10021988 locus=Lus10021988.g ID=Lus10021988.BGIv1.0 annot-version=v1.0 MNDLMTKSWTSYADLKKEAMKDLEADLEMGNVSNSMDNNLGLFLVEADAVQKEMESIKELLFHLQETNDESKSLHKPETLKSLREQINSDIMTVLKKAKA IKSQLEEMDRANASNRRLSGFKEGTPIYRTRVAVTNGLRKKLKELMVDFQALRQRMMTEHKETVGRRYFTVTGEYPDEEVIEKIISDGHNGEQFLKRAIQ EHGRGKVLETVVEIQDRHDAAKEIERSLLELHQVFMDMAVMVETQGEKLDDIEHHVLNASHYVKDGTKELKTAKDYQRGGRKWMCIGVILLLLIVLLIVI PIATSFSHS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10021988 [exp]	0	1
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042527 [exp]	1.0	0.9866
AT4G21270		KATAP, ATK1	KINESIN-LIKE PROTEIN IN ARABI...		Lus10018384 [exp]	4.0	0.9761
AT4G02800			unknown protein		Lus10022037 [exp]	4.5	0.9618
AT2G37420			ATP binding microtubule motor ...		Lus10024429 [exp]	4.9	0.9707
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	5.3	0.9701
					Lus10001684 [exp]	5.9	0.9647
AT2G44190		EMB3116, EDE1, ...	QWRF domain containing 5, EMBR...		Lus10039129 [exp]	6.3	0.9686
AT2G37420			ATP binding microtubule motor ...		Lus10025304 [exp]	8.9	0.9642
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10035943 [exp]	10.5	0.9547
AT3G51280			Tetratricopeptide repeat (TPR)...		Lus10028433 [exp]	10.7	0.9663

Compare expression of checked genes

Lus10021988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.