Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65560 498 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G07290 463 / 9e-145 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G01110 307 / 2e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G59900 308 / 3e-88 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G31850 307 / 9e-87 PGR3 proton gradient regulation 3 (.1) AT5G39710 287 / 2e-82 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 281 / 2e-81 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 276 / 5e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63330 275 / 6e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 276 / 1e-79 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042529 [exp] 1743 / 0 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 545 / 1e-174 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 541 / 2e-173 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10042528 [exp] 365 / 3e-109 AT5G18280 684 / 0.0 apyrase 2 (.1.2) Lus10003424 [exp] 314 / 2e-89 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10007468 [exp] 298 / 3e-86 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 290 / 6e-83 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10043417 [exp] 291 / 1e-82 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 287 / 1e-81 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G124900 [exp] 530 / 4e-169 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 329 / 1e-97 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G105400 [exp] 335 / 1e-96 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 306 / 3e-89 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G021200 [exp] 299 / 3e-88 AT1G12700 491 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.003G105700 [exp] 305 / 1e-87 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G025600 [exp] 300 / 2e-87 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 298 / 2e-86 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 303 / 2e-85 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.006G242500 [exp] 291 / 3e-85 AT1G62930 473 / 1e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF01150 [flax] [poplar] GDA1_CD39 GDA1/CD39 (nucleoside phosphatase) family CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021989 pacid=23160241 polypeptide=Lus10021989 locus=Lus10021989.g ID=Lus10021989.BGIv1.0 annot-version=v1.0 ATGGGTGCGGTGAAGTCCGCGATCGGAGATGTCGTCCTCATTTCCTCCTGGTTGTTCGTTCCCTCTATGTTTGGATTGTTAACCAGCCTCATAGCCACTG CGCTCGGCGTTGAGAAGATGTACTGGCCCTCTATTTTCATCACCACTCTTCTTATTTGTGTCTTCGTGTTCCTCTTCACTTTTATCGCCGACTTTCTCGG CGGTGCCAGTTTCAATCCCGCCGGCAACGTCTCTTTCTACGCGGCTGGGTTTGGCGGCGACACTCTCTTCTCCCTCGCTCTCAGGTTTCCTGCTCAGGCT GCAGGTGCTGTAGCCGGTGTATTAGCTGCAATGGAGGTGATGCCATTGCAATACAAGCACATGCTTGGAGGACCAAGCTTGAAAGTTGATGTGCACACTG GTGCTATTGCAGAGGCTGTGCTGACCTTTTTAATTAGCTTTGCTGTTCTTGTTATAATCATCAAGGGTCCTCGGAACACATTAGCACAGGCGTGGTTGCT TGCTGTTACAACTGTCACGATCGTCATTGCTGGGTCTGGTTATACTGGACCATCCATGAATCCTGCCAATGCAGGTTTCATTAATCCCAAATTACCAGTT GCAAAAGTCTGTCCATCTGATTTTGAGGAAGCAGCTAGACGTGTTTGTGAAACTAAGCTTGAAGCTGCAAGGTCTACTTATGCAGCTGTAGAAGAGGGGA TCCTGCCATATCTGTGCATGGATCTTGTCTACCAATACACATTGCTCGTGGATGGCTTTGAGCAATCTGCACAAAGCCCAATACAGGTCGTTAGAGACGG GCTGGGCTCACTTTCCGCTTCCCAGTTCCCATGCGTACTCTCTCTGCCAACGCTAATTTCGCCTTCGCATCGGACTCCTTCCTCCGCCGAGCTCCTGGAG GCCGGAGCCACATCCCCGACTTATCCCGACCATCTCCCGTCCCACACAATAATGTTGCGTCCTCTTTCAAAATTTTATCTTCCCAACTCCACTCCTCGTC AGTTCTTCTCCTTCTCTTCCGAATACAGCTACCACCAAATCCCGAACTTGACATCCAAAGTTCTCCACTTGCTGTCCAGCGACAGTCGGTGGCCGAGTAA CCCGGAGCTGAATAGTTTGGTTCATCGTCTCCGGCCTGCTCACGTGGAGCATATAATCAGAACTCACAACAGTACAGATGTTGCAACAAGGTTTTTTTTC TGGATCTCTAAGACGCATTTTTACAAACATGATGTGGGCAGTTGTTACGTTCCAATGCTGGATAGACTGGTAAGGGACCGTTGGTTCATTAAGGCCGATG AAGTGAGGATTCTGATGATAAGAGCTTGTAGGAACGAGGGCGAGCTTAAGAGGGTGGTTGAATATTTGAACATCATTAGAGAAAGTGCTGGGTTTGAGTT CAGTTTTCATACTTTTAATACTCTTTTGATTCAGCTGGGGAAGTTTGGTATGGTTAGTTTAGCTCAAAGTGTGTACAATCAGGTTTTGAGCAGTGGGATG ACCCCGAGTTTGGTGACATTAAATTTAATGATTAACGTACTTTGTAAGAAAGGAAAAGTTCGGGAGGCTGAGTTGGTGTTGAGCAAGATTTCTGAGCTCG ATATGTCTCCTGATGTGTTCACCTATACTTCCCTGATCCTTGGACATTGTAGGAACAGGAATCTCGACAAAGCCTTTGAGGTTTTCGATACGATGATTAA GGAAGGGTGTGATCCTAATTCGGTTACGTATTCGACTCTGATCAATGGATTGTGCAAGGAGGGGAGAATAGACGAGGCAATGGATAAGTTTGAAGAGATG AATGAGAAAAAGATTGAATCTTCTGTCCACACTTTTACTGTGCCGATAAGTTGTTTATGTGAATTCGGGCGCGTGGATGAAGCGGTTGGGATTCTAAAAA TCATGAGGGAAAGGGGTTGCTACCCGAATGTGCATAACTACACTGCTCTTATTGGCGGGTTGTTTCGGGCTAGCAGAATGGAGGTTGCGATCGGACTCTA TCACAAAATGTTGAGAGATGGTATAGCTCCCAGTGTTATTACATACAATTTGTTGATCAATGAACTGAGTGTGAAAGATAGGTATGTCGTCGCTTTTGAT TTCTTTGCCTGGATGGAGAGAAATGGTTCCATGGCTAATTCGCAGACCTATAATGCAATAATAAAGGGCTCGTGTGCCATGGACGATGTTGAGAAGTCTA TGGAAATTTTTATCAAAATGTTGAAGGATGGCCCCCAGCCAACTATTGTAACGTATAACACCCTCATTCTTGGGAACCTTAAGCAGGGAAGCCATGATAA TGCGTTGAGATTACTTGATATGATGAAGGACGGTGGATGCGAATCTGATTTATGGACTTATTCGGAGCTCATATCGGGGTTTTGTAAAGGAGGCAAATTG GATTCAGCTGCTTCTCTTTTTAATGAGATGATTAAAAGGGGGATTCAGCCTAGTCAGTGGACTTATACAGCCCTGATTGATGGTTACTGCAAAGAGGGGA AACTGGATGTTGCTTTGTCATTGCTCAAAAGGATGAGAGAAACCGATTGCTACCCGAGTATTGAAACTTATAATGCCATAATAAGTGGGTTTTCAAAGGA TAATCAGTTTTCCGAGGCAGAGCGACTATGTGCGGCTATGTCGGGGGAAGGGTTGGTACCAAATGTGATCACTTATACATCTTTGATTCATGGGTTGTGC AGGAACAGTGCAATCAATATGGCATTCAAAGTTTTCAATGAAATGGAGCAGCAACATGGGTGCTTTCCAAATGTACAAACGTATACTTCACTCATCTATG GCTTGTGTCAAGAAGGCAAAGCTGACGAGGCAGAAAGATTGCTCGAGAAAATGGAAGGAAAGGGAATTTCTCCTGACGAGGTTACCTTCACTGCTCTTAT TGATGGTTTTGTGATGCTTAGTAGATTGGATGATGCATTTTCATTGTATCAACGAATGGTCCACATGGGTTGCAAGCCAAACTTCAGAACTTACTCTGTG CTACTGAAAGGACTAGATAAAGAAGCACAATTGCTTGCAGAAAGAGCCATGGCTCAAAATGAGACTTCCCGTGTGAGTGAATCGGATGATAAGGTTACTA GTTTCGAATTGATCTGTCATCTCCTATCTAGATTATCAGAACCGACAGTAGATGTGTACAGTATTCTCGTCAGTGGCTTGTGTAAGGAGGGAAGATCACA TGAGGCAAATCAATTGGTAGAATATATGATAGGAAGTGGGTTGTCACCTACTATGGAGATGTACGTCTCCCTGCTATTCGCTCACTGTAAGAATTTAGAA GTGGGCCCTGCTTTGCAAATTTTTAACCTGGTAAAGCTTGAAGTCTTCAAGCCTAATCTCTCTGTCTATAAAGCTCTTATTCGTGCTCTATGCATGAAGA ATCAGTTGGAAGAAGCCGAAACTTTGTTCAAGTTGTTATTAGAAGAACAAAGGAGCGGCGATCTGATTGTTTGGACAGTGTTGATTGACGGGCTGCTGAA AGGAGGAAAATCAGACGTGTGCATGAAGTTTCTACAACTGATGGAATCTAGGAATTACTCACTTTTCTTACATACTTATGTGTCCTTGGCAAGAGAACTT TCTAAGGCAGGTCAATCAATAGAGATTGATAGAATGTTCACTAAGCTGAGCAGCTTGAAGGAAAAGGTACTACAGTTACATTGTATATTCGTATTGGGTG TAGTGACAAAATCATTCTTTGAGTTTATCACTATGTCAACTCCATTCTTCACTGAATGCTTTGTGTGCCTTGTGGTATCATTGGAAGCGATGTCTGGGGA AGATTATCGTTTGCCGCGGTTTATCGATCGTCTTATTTCTGCGTTAAATCGAAAATTGAATGAGGAGAGAGCGGATGGGAAGAAGTCTAGACTGGAGGTT GTTGGTCAGTTGAGTACGCAGTTTCAGATTTTCGGACTGATATATGTGGACCTTGATATGCACTCTCCTGTGAGAGAGCAGACGGTTGATGAGATTTTTG CTAGCCAGCCCCTAGATTTGGGTTTGACACCTTTATCTGAGTCTGGTGGGGCGGACAGCTTCGTTGAGTGGGTTCAGGAGTACTATGTGATCGTTGAGGG CATACGAGGGTTGTGGACTGAGTATGCCCCATAA
AA sequence Show only first row Show all	>Lus10021989 pacid=23160241 polypeptide=Lus10021989 locus=Lus10021989.g ID=Lus10021989.BGIv1.0 annot-version=v1.0 MGAVKSAIGDVVLISSWLFVPSMFGLLTSLIATALGVEKMYWPSIFITTLLICVFVFLFTFIADFLGGASFNPAGNVSFYAAGFGGDTLFSLALRFPAQA AGAVAGVLAAMEVMPLQYKHMLGGPSLKVDVHTGAIAEAVLTFLISFAVLVIIIKGPRNTLAQAWLLAVTTVTIVIAGSGYTGPSMNPANAGFINPKLPV AKVCPSDFEEAARRVCETKLEAARSTYAAVEEGILPYLCMDLVYQYTLLVDGFEQSAQSPIQVVRDGLGSLSASQFPCVLSLPTLISPSHRTPSSAELLE AGATSPTYPDHLPSHTIMLRPLSKFYLPNSTPRQFFSFSSEYSYHQIPNLTSKVLHLLSSDSRWPSNPELNSLVHRLRPAHVEHIIRTHNSTDVATRFFF WISKTHFYKHDVGSCYVPMLDRLVRDRWFIKADEVRILMIRACRNEGELKRVVEYLNIIRESAGFEFSFHTFNTLLIQLGKFGMVSLAQSVYNQVLSSGM TPSLVTLNLMINVLCKKGKVREAELVLSKISELDMSPDVFTYTSLILGHCRNRNLDKAFEVFDTMIKEGCDPNSVTYSTLINGLCKEGRIDEAMDKFEEM NEKKIESSVHTFTVPISCLCEFGRVDEAVGILKIMRERGCYPNVHNYTALIGGLFRASRMEVAIGLYHKMLRDGIAPSVITYNLLINELSVKDRYVVAFD FFAWMERNGSMANSQTYNAIIKGSCAMDDVEKSMEIFIKMLKDGPQPTIVTYNTLILGNLKQGSHDNALRLLDMMKDGGCESDLWTYSELISGFCKGGKL DSAASLFNEMIKRGIQPSQWTYTALIDGYCKEGKLDVALSLLKRMRETDCYPSIETYNAIISGFSKDNQFSEAERLCAAMSGEGLVPNVITYTSLIHGLC RNSAINMAFKVFNEMEQQHGCFPNVQTYTSLIYGLCQEGKADEAERLLEKMEGKGISPDEVTFTALIDGFVMLSRLDDAFSLYQRMVHMGCKPNFRTYSV LLKGLDKEAQLLAERAMAQNETSRVSESDDKVTSFELICHLLSRLSEPTVDVYSILVSGLCKEGRSHEANQLVEYMIGSGLSPTMEMYVSLLFAHCKNLE VGPALQIFNLVKLEVFKPNLSVYKALIRALCMKNQLEEAETLFKLLLEEQRSGDLIVWTVLIDGLLKGGKSDVCMKFLQLMESRNYSLFLHTYVSLAREL SKAGQSIEIDRMFTKLSSLKEKVLQLHCIFVLGVVTKSFFEFITMSTPFFTECFVCLVVSLEAMSGEDYRLPRFIDRLISALNRKLNEERADGKKSRLEV VGQLSTQFQIFGLIYVDLDMHSPVREQTVDEIFASQPLDLGLTPLSESGGADSFVEWVQEYYVIVEGIRGLWTEYAP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65560			Pentatricopeptide repeat (PPR)...		Lus10021989 [exp]	0	1
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10036609 [exp]	42.4	0.8098
AT1G65410		ABCI13, TGD3, A...	TRIGALACTOSYLDIACYLGLYCEROL 3,...		Lus10020188 [exp]	53.8	0.7611
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Lus10035827 [exp]	55.0	0.8011
AT5G06740			Concanavalin A-like lectin pro...		Lus10009423 [exp]	55.3	0.7618
AT4G35260		IDH-I, IDH1	isocitrate dehydrogenase I, is...		Lus10041824 [exp]	92.0	0.7667
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Lus10038409 [exp]	142.7	0.7632
AT2G23140			RING/U-box superfamily protein...		Lus10011514 [exp]	189.0	0.7637
AT2G01190		PDE331	PIGMENT DEFECTIVE 331, Octicos...		Lus10013486 [exp]	198.5	0.7569
AT5G13430			Ubiquinol-cytochrome C reducta...		Lus10031982 [exp]	224.4	0.7633
AT1G15130			Endosomal targeting BRO1-like ...		Lus10035265 [exp]	252.6	0.7575

Compare expression of checked genes

Lus10021989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.