Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G15010 589 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80880 254 / 4e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15200 248 / 6e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 219 / 7e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 217 / 3e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80550 210 / 3e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 211 / 2e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 211 / 2e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 211 / 3e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 206 / 5e-58 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041669 [exp] 260 / 4e-79 AT1G80880 511 / 2e-177 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042530 [exp] 239 / 5e-76 AT5G15010 182 / 3e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042529 [exp] 248 / 6e-71 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 228 / 4e-66 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031837 [exp] 221 / 1e-64 AT3G15200 499 / 2e-173 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003461 [exp] 221 / 3e-63 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 209 / 3e-59 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 202 / 9e-58 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 199 / 2e-56 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G053600 [exp] 724 / 0 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G043500 [exp] 255 / 2e-77 AT1G80880 570 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G115500 [exp] 239 / 3e-71 AT3G15200 546 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 225 / 6e-65 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 218 / 4e-64 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 211 / 1e-60 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 204 / 2e-58 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G147200 [exp] 201 / 4e-58 AT1G80550 547 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G079400 [exp] 185 / 4e-51 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G084000 [exp] 184 / 9e-51 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10021991 pacid=23160253 polypeptide=Lus10021991 locus=Lus10021991.g ID=Lus10021991.BGIv1.0 annot-version=v1.0 ATGTTCAACTGCTGCCAGTTTCTCACTCTTTTTGGACACGAGTCAACCATGCGGGAAATTAGAGCAGCAAGATCAGTTCTAAGGGCGTTATTTACTCACG TTCGTAGTACGCGTCCCAATTTGTCTCATGTCAAACCAGTTCCTTTCTCCAATCGGTCAGTTGAGGCTGGTTTTGAGAAGCCATGGGGTTCAGAGTTTGT GTGTGCTTTATGTTCTTTCTCTGGATTGAGTCTCGACGATGATGCACCATCTTCCTCCAGCTCAAGTATGGACTCCCTAGTTGGAGAAACGGCTGGAGAA GCTCTAGAGAAGTTTTTCGTCAATAGCGATGATGATGGTGATCATGGTTACTGCAGTAACGGGGATGATATACAGGTGGACTTGTGTCACGATGCTTTAC TTCAAGATGTGAAGACCGTTGTCAAAATGCTGCACGAGTTCAGTAAAAATCGAGTGGAAATGAGAGATAAGATTGAACATTGTGGGATTAGGGTGTCACA GGAACTGGTCCGTGAAGTAATTTCCAGGGTCCGAAATGACTGGGAAGCAGCCTTCACTTTCTTCTTGTGGGCTGGCAGACAGCCTGGTTATGCTCATTCT CTACGCGAGTATCATGCTATGATCTCCATCCTCGGCAAGATGAGGAAATTCGATACAGCGTGGGCGGTAGTCGATGAGATGAGAGGTGTCAAGACTGGAG GAGTGTCCCTTGTTACTCCACAAACTCTGATGATCATGATAAGAAGATATGCGGCAGCTCATGATGTTGGTCAAGCCATCAATACCTTTTATGCATACAA GCGCTTTAAACTCAAAGTGGGAATTGAAGACTTCCATGGTCTTTTGTCAGCTCTGTCTCGTTATAAGAACGTGCAAGATGCTGAACAGCTAATGTACTGC AACAAAGAGATCTTCCCGTTAAACACCAAGAGTTACAACATTGTGCTGAATGGATGGTCCAATGTGATTGGTAGCCCTCGACAAGCAGAGAGAGTGTGGA GAGAGATGTCCAAAAGAGGAATCCGTTACGATGTTGTTTCATATTCGAGCATCTTATCTTGTTATTCAAAGTCGGGGAACATTTACAAGGTTCTGAAGAT GTACGAGAGGATGAAGGAAATGAACATCGAACCAGATAGGAAAGTGTATAATGCTGTTATTCATGCTCTTGCAAAGGCCAGGCATGCAAAGGAAGCTATT GATCTCATGAAGAAAATGGATGAGAAGGGCGTTTCGCCCAATGCTGTGACGTATAATTCATTGATTAAGCCATTGTGCAAGGCACAAAAAATAGACGAAG CGAGAATTGTCTTTGATGAGATGTTACAAGTCGGGCTTCCTCCAACAGTACAGACTTATCATGCTTTCTTGCGCTACCTCCTGACCGCTGAGGGAGCATT TGAAATATTGGAAAACATGACAAAGGTAGGATGCGAACCTACTAACGAGACCTACATGTTGCTGATAAGAAAGTTCTGCCGATGGCGACAACTTGGCAAC GTTTTTAAGCTTTGGGATCTGATGATCGAGAAGGGTATTAGTCCTGACCGTAGCACGTATATTGTGCTGATACATGGGCTGTTCTTAAATGGCGAGTTGG AATCGGCACATAAATATTACGCAGAAATGAAGGAGAAGCAGCTACTGCCAGAACCTAACATAGATGAGGTGATCCAGACTTGGTTGTCAAACAAGGAAAT AGCTAATCTGCAGCTGGCTAAATTGCGAGGCAATCAGTCAAGCAAGCCAGAGAGAGATATCTCTCCAAAGCTTGGGCAGGATAAGAATTTCAGACAGCAA GTCGGAACCCCAAAAGTTGTGAGAGATCGCGGCTTTTCTTTCTGGGAATAG
AA sequence Show only first row Show all	>Lus10021991 pacid=23160253 polypeptide=Lus10021991 locus=Lus10021991.g ID=Lus10021991.BGIv1.0 annot-version=v1.0 MFNCCQFLTLFGHESTMREIRAARSVLRALFTHVRSTRPNLSHVKPVPFSNRSVEAGFEKPWGSEFVCALCSFSGLSLDDDAPSSSSSSMDSLVGETAGE ALEKFFVNSDDDGDHGYCSNGDDIQVDLCHDALLQDVKTVVKMLHEFSKNRVEMRDKIEHCGIRVSQELVREVISRVRNDWEAAFTFFLWAGRQPGYAHS LREYHAMISILGKMRKFDTAWAVVDEMRGVKTGGVSLVTPQTLMIMIRRYAAAHDVGQAINTFYAYKRFKLKVGIEDFHGLLSALSRYKNVQDAEQLMYC NKEIFPLNTKSYNIVLNGWSNVIGSPRQAERVWREMSKRGIRYDVVSYSSILSCYSKSGNIYKVLKMYERMKEMNIEPDRKVYNAVIHALAKARHAKEAI DLMKKMDEKGVSPNAVTYNSLIKPLCKAQKIDEARIVFDEMLQVGLPPTVQTYHAFLRYLLTAEGAFEILENMTKVGCEPTNETYMLLIRKFCRWRQLGN VFKLWDLMIEKGISPDRSTYIVLIHGLFLNGELESAHKYYAEMKEKQLLPEPNIDEVIQTWLSNKEIANLQLAKLRGNQSSKPERDISPKLGQDKNFRQQ VGTPKVVRDRGFSFWE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G15010			Tetratricopeptide repeat (TPR)...		Lus10021991 [exp]	0	1
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Lus10005339 [exp]	5.4	0.8249
AT1G04790			RING/U-box superfamily protein...		Lus10011747 [exp]	6.7	0.8157
AT2G36850		CHOR, ATGSL8, A...	CHORUS, glucan synthase-like 8...		Lus10014796 [exp]	10.0	0.8181
AT3G46220			unknown protein		Lus10040874 [exp]	11.2	0.7981
AT1G71210			Pentatricopeptide repeat (PPR)...		Lus10008998 [exp]	12.0	0.7999
AT3G23900			RNA recognition motif (RRM)-co...		Lus10032590 [exp]	14.5	0.7748
AT2G31290			Ubiquitin carboxyl-terminal hy...		Lus10003059 [exp]	16.3	0.6972
AT5G58410			HEAT/U-box domain-containing p...		Lus10042236 [exp]	17.7	0.7938
AT2G26780			ARM repeat superfamily protein...		Lus10036052 [exp]	18.0	0.8026
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Lus10014244 [exp]	18.4	0.7583

Compare expression of checked genes

Lus10021991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.