Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30580 274 / 2e-88 BMI1A, DRIP2 DREB2A-interacting protein 2 (.1) AT1G06770 270 / 6e-87 DRIP1 DREB2A-interacting protein 1 (.1.2) AT3G23060 89 / 4e-19 RING/U-box superfamily protein (.1) AT5G13250 81 / 1e-16 RING finger protein (.1) AT1G28080 49 / 2e-06 RING finger protein (.1) AT1G03770 48 / 7e-06 ATRING1B ARABIDOPSIS THALIANA RING 1B, RING 1B (.1.2.3) AT5G44280 46 / 5e-05 ATRING1A ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042532 [exp] 663 / 0 AT1G06770 267 / 9e-86 DREB2A-interacting protein 1 (.1.2) Lus10014749 [exp] 258 / 1e-81 AT2G30580 391 / 1e-133 DREB2A-interacting protein 2 (.1) Lus10033860 [exp] 254 / 3e-80 AT2G30580 386 / 1e-131 DREB2A-interacting protein 2 (.1) Lus10006558 [exp] 230 / 7e-72 AT2G30580 252 / 2e-80 DREB2A-interacting protein 2 (.1) Lus10018609 [exp] 44 / 0.0002 AT5G44280 375 / 3e-124 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10039845 [exp] 44 / 0.0003 AT5G44280 370 / 2e-122 ARABIDOPSIS THALIANA RING 1A, RING 1A (.1.2) Lus10003261 [exp] 0 / 1 AT2G30580 274 / 9e-88 DREB2A-interacting protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G054400 [exp] 341 / 3e-114 AT2G30580 310 / 5e-102 DREB2A-interacting protein 2 (.1) Potri.013G042000 [exp] 333 / 4e-111 AT2G30580 362 / 5e-122 DREB2A-interacting protein 2 (.1) Potri.005G219000 [exp] 273 / 1e-87 AT2G30580 399 / 5e-137 DREB2A-interacting protein 2 (.1) Potri.002G044100 [exp] 263 / 1e-83 AT2G30580 382 / 2e-130 DREB2A-interacting protein 2 (.1) Potri.010G077800 [exp] 259 / 2e-82 AT2G30580 352 / 4e-118 DREB2A-interacting protein 2 (.1) Potri.008G161500 [exp] 137 / 3e-36 AT2G30580 317 / 4e-105 DREB2A-interacting protein 2 (.1) Potri.005G054100 [exp] 123 / 6e-32 AT2G30580 145 / 4e-40 DREB2A-interacting protein 2 (.1) Potri.001G062700 [exp] 77 / 2e-15 AT5G13250 202 / 2e-61 RING finger protein (.1) Potri.003G164800 [exp] 76 / 5e-15 AT5G13250 218 / 1e-67 RING finger protein (.1) Potri.004G137200 [exp] 67 / 3e-12 AT5G13250 92 / 9e-21 RING finger protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10021993 pacid=23160226 polypeptide=Lus10021993 locus=Lus10021993.g ID=Lus10021993.BGIv1.0 annot-version=v1.0 ATGGCGGAGAACGATGTGATGAAAGTGAATATAAAGACATTGAAGGCATGCATGACATGCCGTCTCTGCAATAAACTCTTCCGTCAACCTACCACCATCT CTCTTTGCCTCCATACATTCTGCAGAAAGTGCATATATAACAGGTTATCAGATGGTGGAGTTGGTACCTGCCCTGTATGTGATAGTGACCTTGGTTGTAA CCCACTGGACAAACTCAGGCGGGATTACAACTTGGAAGATCTAAGAGCTAAAATATTTCCTCTCAAGAGAAGAAAAGTTGTTAAGCCTTCTTCTGAGGTT GTCACTTCAATGGCAAAGCCAGCAAAGAGAAAAGAAGTATCAGTATCATCTTTGCCGGTTCCTATTCCTACTTTCACACTGAGTAAACAAGTTGGTGTGA CTGGAAGTCAACCCAAACCTGGAAAAATCAAATCTCCTGGATTACGTGAATGTGGCAATACCACCAAAGATACACATGCTAGCTCAAGCCCTCCTTATAA GTCTCTAAGTAAAATTTCACTAAGAAAAATGCAGGTTTCTTCGGTTGTTGAGCCTTCGAACGAGGATCGATCTAATGGAAGTGGGGACGACGATTGTGTA GTAATAGCTGAACGGAAAAAAGCTGATGTATGGACATCGTTGAACGGTCTTGTTGAAGCTGCTAGTAACAGAACCAAGTCATCAAAGCACAGCTCACAAG TTCAGTCTCTTGCCGAATCAGAGCCTTCAAATGTCCCTGGATGCGTTGAACCGAACTCCACAGAAGCAGAAGTAGAAGTGGATTCTGATGTTGTTCACGG CAACAAAACACTCGTTGTCGAAAACGAAAGTAAAGATGATGATCGTGGAATCAAAGCTCGCGATGATGATAAGAACTGCGTAAATCCAAGGAACGATGGC GATAGAAGGAACTGCTCGGTTTGGTTGTCATTGGTCGCTAATGATGACAAGAATGGAGATACTTCACTTCCCCAGATTCCTGCTTGTTACTTGAGGATCA AGGACAGTAAAACGATGGTGTCATCCATCCAGAAATACATTGCCAAGAAATTTGAACTTAGTAATGAGGCTGAGGTGGAAATAAAGTGCAGGGGAGAACC AGTGGTTCCAACACTGCAACTCCAGAACTTGGTAGATTTATGGTTCAGGGATGTAACAACCAAACAATTGGCGGCGCCCCTTGTGGGTTCTTCTGCAAAA GATTTCGTCATGGTCTTGTCTTACTGCCGTAAAGTTCAAGCATCTTGA
AA sequence Show only first row Show all	>Lus10021993 pacid=23160226 polypeptide=Lus10021993 locus=Lus10021993.g ID=Lus10021993.BGIv1.0 annot-version=v1.0 MAENDVMKVNIKTLKACMTCRLCNKLFRQPTTISLCLHTFCRKCIYNRLSDGGVGTCPVCDSDLGCNPLDKLRRDYNLEDLRAKIFPLKRRKVVKPSSEV VTSMAKPAKRKEVSVSSLPVPIPTFTLSKQVGVTGSQPKPGKIKSPGLRECGNTTKDTHASSSPPYKSLSKISLRKMQVSSVVEPSNEDRSNGSGDDDCV VIAERKKADVWTSLNGLVEAASNRTKSSKHSSQVQSLAESEPSNVPGCVEPNSTEAEVEVDSDVVHGNKTLVVENESKDDDRGIKARDDDKNCVNPRNDG DRRNCSVWLSLVANDDKNGDTSLPQIPACYLRIKDSKTMVSSIQKYIAKKFELSNEAEVEIKCRGEPVVPTLQLQNLVDLWFRDVTTKQLAAPLVGSSAK DFVMVLSYCRKVQAS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30580		BMI1A, DRIP2	DREB2A-interacting protein 2 (...		Lus10021993 [exp]	0	1
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Lus10026418 [exp]	4.8	0.9056
AT2G23110			Late embryogenesis abundant pr...		Lus10042745 [exp]	8.2	0.8886
AT2G23110			Late embryogenesis abundant pr...		Lus10029709 [exp]	8.8	0.8937
AT4G12910		SCPL20	serine carboxypeptidase-like 2...		Lus10026827 [exp]	13.3	0.7755
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Lus10041752 [exp]	13.4	0.8689
AT5G07050			nodulin MtN21 /EamA-like trans...		Lus10041634 [exp]	14.4	0.8985
AT3G19550			unknown protein		Lus10013900 [exp]	14.7	0.8786
AT1G15170			MATE efflux family protein (.1...		Lus10029694 [exp]	15.5	0.8747
AT3G22600			Bifunctional inhibitor/lipid-t...		Lus10041197 [exp]	15.7	0.8779
AT1G01580		FRD1, ATFRO2, F...	FERRIC CHELATE REDUCTASE DEFEC...		Lus10039268 [exp]	16.6	0.8649

Compare expression of checked genes

Lus10021993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.