Plant FIBer expression Database

Lus10021994 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G08780 187 / 2e-62 PFD4, PDF4, AIP3, ABI3, API3 PREFOLDIN 4, ABI3-interacting protein 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042533
[exp]
243 / 9e-85 AT1G08780 186 / 5e-62 PREFOLDIN 4, ABI3-interacting protein 3 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G054500
[exp]
214 / 4e-73 AT1G08780 183 / 7e-61 PREFOLDIN 4, ABI3-interacting protein 3 (.1)
Potri.013G042100
[exp]
207 / 1e-70 AT1G08780 187 / 9e-63 PREFOLDIN 4, ABI3-interacting protein 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0200 Prefoldin PF01920 Prefoldin_2 Prefoldin subunit
Representative CDS sequence
>Lus10021994 pacid=23160273 polypeptide=Lus10021994 locus=Lus10021994.g ID=Lus10021994.BGIv1.0 annot-version=v1.0
ATGCAACAGAGCGGCGGATCCGAGACACATGTAACTTGGGAGGATCAGCAGAACATCAACAAATTCGGAAGGCTCAACAACCGATTTCATGAGCTCGAGG
AAGAGATCAAGACAGCCAAGGAAACGAATGAGAATCTGGAGGATGCGGGCAACGAGCTGATTCTTACGGACGAGGATGTCGTGCGATTCCAGATAGGAGA
GGTCTTTGCTCATGTTGAAAAGGATGAAGTTGAGACCCGGATAGAGGCGATGAAAGAGACGACTTCCAAGAACTTGGAGAAACTGGAAGAGGAGAAAGCT
TCAATCTTAGCACAGATGGGGGAGTTGAAGAAGATTCTGTATGGAAAGTTTGGAGATTCCATTAACCTTGAGGAGGACTAA
AA sequence
>Lus10021994 pacid=23160273 polypeptide=Lus10021994 locus=Lus10021994.g ID=Lus10021994.BGIv1.0 annot-version=v1.0
MQQSGGSETHVTWEDQQNINKFGRLNNRFHELEEEIKTAKETNENLEDAGNELILTDEDVVRFQIGEVFAHVEKDEVETRIEAMKETTSKNLEKLEEEKA
SILAQMGELKKILYGKFGDSINLEED

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G08780 PFD4, PDF4, AIP... PREFOLDIN 4, ABI3-interacting ... Lus10021994
[exp]
0 1
AT1G65650 UCH2 Peptidase C12, ubiquitin carbo... Lus10042047
[exp]
1.7 0.8851
AT5G06210 RNA binding (RRM/RBD/RNP motif... Lus10013306
[exp]
3.5 0.8654
AT3G48660 Protein of unknown function (D... Lus10011353
[exp]
4.2 0.8379
AT5G52200 AtI-2 inhibitor-2, phosphoprotein ph... Lus10005751
[exp]
5.3 0.8384
AT5G56670 Ribosomal protein S30 family p... Lus10028808
[exp]
5.5 0.8401
AT1G08780 PFD4, PDF4, AIP... PREFOLDIN 4, ABI3-interacting ... Lus10042533
[exp]
7.7 0.8394
AT3G59490 unknown protein Lus10013685
[exp]
9.5 0.7930
AT3G62140 unknown protein Lus10038035
[exp]
10.8 0.8695
Lus10000299
[exp]
11.0 0.7847
AT5G21060 Glyceraldehyde-3-phosphate deh... Lus10034077
[exp]
11.4 0.7833

Lus10021994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.