Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08770 106 / 2e-28 PRA1.E prenylated RAB acceptor 1.E (.1) AT1G55190 105 / 4e-28 PRA7, PRA1.F2 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) AT3G13710 94 / 1e-23 PRA1.F4 prenylated RAB acceptor 1.F4 (.1) AT2G40380 92 / 5e-23 PRA1.B2 prenylated RAB acceptor 1.B2 (.1) AT2G38360 92 / 9e-23 PRA1.B4 prenylated RAB acceptor 1.B4 (.1) AT5G01640 91 / 3e-22 PRA1.B5 prenylated RAB acceptor 1.B5 (.1) AT5G07110 86 / 2e-20 PRA1.B6 prenylated RAB acceptor 1.B6 (.1) AT3G56110 84 / 4e-20 PRA1.B1 prenylated RAB acceptor 1.B1 (.1.2) AT5G05380 84 / 7e-20 PRA1.B3 prenylated RAB acceptor 1.B3 (.1) AT3G13720 82 / 2e-19 PRA8, PRA1.F3 PRENYLATED RAB ACCEPTOR 1.F3, PRA1 (Prenylated rab acceptor) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042535 [exp] 260 / 1e-88 AT1G08770 157 / 1e-48 prenylated RAB acceptor 1.E (.1) Lus10014747 [exp] 114 / 2e-31 AT1G55190 147 / 9e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10033859 [exp] 113 / 4e-31 AT1G55190 149 / 1e-45 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10034363 [exp] 105 / 3e-28 AT1G55190 197 / 1e-64 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10005088 [exp] 104 / 9e-28 AT1G55190 199 / 3e-65 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10042246 [exp] 102 / 1e-26 AT2G38360 250 / 4e-84 prenylated RAB acceptor 1.B4 (.1) Lus10026404 [exp] 101 / 2e-26 AT2G38360 253 / 5e-86 prenylated RAB acceptor 1.B4 (.1) Lus10015631 [exp] 99 / 7e-26 AT1G55190 193 / 7e-63 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Lus10037649 [exp] 93 / 1e-23 AT1G55190 153 / 2e-47 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G054700 [exp] 162 / 5e-50 AT1G08770 137 / 1e-40 prenylated RAB acceptor 1.E (.1) Potri.005G219100 [exp] 136 / 4e-40 AT1G55190 132 / 8e-39 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G044000 [exp] 133 / 4e-39 AT1G55190 130 / 4e-38 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.002G043800 [exp] 112 / 9e-31 AT1G55190 136 / 1e-40 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.003G035200 [exp] 95 / 3e-24 AT1G55190 161 / 2e-50 PRENYLATED RAB ACCEPTOR 1.F2, PRA1 (Prenylated rab acceptor) family protein (.1) Potri.006G104400 [exp] 80 / 3e-18 AT2G38360 206 / 5e-67 prenylated RAB acceptor 1.B4 (.1) Potri.010G183300 [exp] 79 / 4e-18 AT3G56110 239 / 9e-81 prenylated RAB acceptor 1.B1 (.1.2) Potri.016G126400 [exp] 78 / 1e-17 AT2G38360 209 / 2e-68 prenylated RAB acceptor 1.B4 (.1) Potri.019G124100 [exp] 74 / 6e-16 AT5G05380 140 / 8e-42 prenylated RAB acceptor 1.B3 (.1) Potri.008G074000 [exp] 71 / 4e-15 AT3G56110 213 / 2e-70 prenylated RAB acceptor 1.B1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03208 [flax] [poplar] PRA1 PRA1 family protein
Representative CDS sequence Show only first row Show all	>Lus10021996 pacid=23160242 polypeptide=Lus10021996 locus=Lus10021996.g ID=Lus10021996.BGIv1.0 annot-version=v1.0 ATGCCGCCGGTGAAACCAACCGCCGGTTACGGCACAATTCCGACCACCACTACCACCACTACAACAACCGCGTCCCCTTCCCAAGCCTCCTTCACCCTCG TTTCACGCGCCGCCGCCACGACCCGCAGCTTCGCCGCCACCGCGCGGCCATGGCGGGAAGTGTTCAGCCTCTCCTCCTTCTCCCGCCCGCACGACTACGT ACAGGCGATGTCCCGTATCAAGTCCAACACCAACTACTTCCGGGTCAACTACACCATGGCCTTGCTATTCGTCCTCTTCCTGAGCCTCCTGTGGCACCCT GTCTCCATGATCGTCTTCATCCTCGTCTTCGTCGCCTGGTTCTTCCTCTACTTTGGCCGCGGCGTCGAAGACGGGCCAGTGGTGGTGTTCGGCAGGAATG TCGACGACAGAATGTTGATCTCTGGGTTAGGGTTGGTGACGGTGGTGGCTTTGGTGATGACGGATGTGGGAGTGAATGTGCTGGTGGCTCTAATAGTTGG GGTGGCGATTGTGGCGATTCACGGCGCGTTTAGAGGGGACGAGGATTTGTTTGTTGAGCAGGACGGTGGGTTGCTTTCGGTTGTGGGAGAACATCAGCCT TTGAGGAGTTCAGCACCAGCAGCTGCAGGGTATAACCGGTTTTGA
AA sequence Show only first row Show all	>Lus10021996 pacid=23160242 polypeptide=Lus10021996 locus=Lus10021996.g ID=Lus10021996.BGIv1.0 annot-version=v1.0 MPPVKPTAGYGTIPTTTTTTTTTASPSQASFTLVSRAAATTRSFAATARPWREVFSLSSFSRPHDYVQAMSRIKSNTNYFRVNYTMALLFVLFLSLLWHP VSMIVFILVFVAWFFLYFGRGVEDGPVVVFGRNVDDRMLISGLGLVTVVALVMTDVGVNVLVALIVGVAIVAIHGAFRGDEDLFVEQDGGLLSVVGEHQP LRSSAPAAAGYNRF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08770		PRA1.E	prenylated RAB acceptor 1.E (....		Lus10021996 [exp]	0	1
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10027269 [exp]	1.7	0.8218
AT5G53280		PDV1	plastid division1 (.1)		Lus10027574 [exp]	5.1	0.7163
AT1G12310			Calcium-binding EF-hand family...		Lus10032205 [exp]	5.3	0.7404
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	7.9	0.7746
AT5G66090			unknown protein		Lus10028414 [exp]	11.8	0.7547
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	11.9	0.7787
AT3G51850		CPK13	calcium-dependent protein kina...		Lus10027808 [exp]	14.1	0.7191
AT2G02510			NADH dehydrogenase (ubiquinone...		Lus10005182 [exp]	14.7	0.7215
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10004885 [exp]	15.3	0.7204
AT5G62200			Embryo-specific protein 3, (AT...		Lus10031684 [exp]	17.0	0.7441

Compare expression of checked genes

Lus10021996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.