Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08790 129 / 4e-39 Protein of unknown function (DUF1685) (.1) AT5G28690 119 / 7e-35 Protein of unknown function (DUF1685) (.1) AT3G04700 116 / 8e-34 Protein of unknown function (DUF1685) (.1) AT3G04710 107 / 3e-28 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT2G31560 87 / 3e-22 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT4G33985 85 / 5e-22 Protein of unknown function (DUF1685) (.1) AT1G05870 86 / 6e-22 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) AT2G43340 85 / 1e-21 Protein of unknown function (DUF1685) (.1) AT2G15590 74 / 1e-17 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) AT3G50350 73 / 4e-17 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042536 [exp] 238 / 2e-82 AT1G08790 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10006560 [exp] 194 / 7e-65 AT1G08790 166 / 2e-52 Protein of unknown function (DUF1685) (.1) Lus10005536 [exp] 101 / 8e-29 AT5G28690 119 / 3e-35 Protein of unknown function (DUF1685) (.1) Lus10027022 [exp] 91 / 2e-23 AT2G31560 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2) Lus10025562 [exp] 90 / 3e-23 AT1G05870 183 / 1e-58 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Lus10002400 [exp] 81 / 3e-20 AT4G33985 150 / 7e-47 Protein of unknown function (DUF1685) (.1) Lus10027898 [exp] 72 / 8e-17 AT4G33985 141 / 2e-43 Protein of unknown function (DUF1685) (.1) Lus10019852 [exp] 71 / 2e-16 AT4G33985 149 / 9e-47 Protein of unknown function (DUF1685) (.1) Lus10014064 [exp] 69 / 1e-15 AT4G33985 145 / 2e-45 Protein of unknown function (DUF1685) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G055100 [exp] 167 / 6e-54 AT1G08790 126 / 1e-36 Protein of unknown function (DUF1685) (.1) Potri.013G042400 [exp] 163 / 3e-52 AT1G08790 151 / 2e-46 Protein of unknown function (DUF1685) (.1) Potri.007G043900 [exp] 97 / 2e-26 AT4G33985 134 / 3e-40 Protein of unknown function (DUF1685) (.1) Potri.005G138100 [exp] 97 / 2e-26 AT4G33985 139 / 2e-42 Protein of unknown function (DUF1685) (.1) Potri.007G126700 [exp] 95 / 3e-25 AT1G05870 188 / 7e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.017G032800 [exp] 86 / 9e-22 AT1G05870 190 / 1e-61 Protein of unknown function (DUF1685) (.1), Protein of unknown function (DUF1685) (.2), Protein of unknown function (DUF1685) (.3), Protein of unknown function (DUF1685) (.4) Potri.009G101300 [exp] 78 / 3e-19 AT4G33985 130 / 2e-39 Protein of unknown function (DUF1685) (.1) Potri.014G111000 [exp] 47 / 3e-07 AT2G46940 148 / 4e-43 unknown protein Potri.002G185700 [exp] 38 / 0.0008 AT2G46940 111 / 4e-29 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07939 [flax] [poplar] DUF1685 Protein of unknown function (DUF1685)
Representative CDS sequence Show only first row Show all	>Lus10021997 pacid=23160235 polypeptide=Lus10021997 locus=Lus10021997.g ID=Lus10021997.BGIv1.0 annot-version=v1.0 ATGAGGCTGGAGCGTCGGAGGAGCAGGAGCATCCCGTCGGTTGACTCGTCGGAGGATTTGACAGACGAGGATTTGAATGAGCTGAAAGGATGCATAGAGC TAGGGTTTGGGTTCGACGAGGGAAAGGGGCAGCACCTGACCAATACCTTTCCGGCTTTGGATCTATACTTCGCCGTCAACCGCCAGCTGTCTCCTTCCCC TGTTTTCACCCCCGGTAGCCAATCGGGGGATTCGCAGTCGGCGGAGAGCCCCAATAGTGAACAAGATTGGAAGATTTGTAACCCAGGGGATCATCCGGAT CAAGTGAAGACAAAGTTGAGGCATTGGGCTCAAGCTGTGGCCTGTTCTGTCATGCAATCTTACTAG
AA sequence Show only first row Show all	>Lus10021997 pacid=23160235 polypeptide=Lus10021997 locus=Lus10021997.g ID=Lus10021997.BGIv1.0 annot-version=v1.0 MRLERRRSRSIPSVDSSEDLTDEDLNELKGCIELGFGFDEGKGQHLTNTFPALDLYFAVNRQLSPSPVFTPGSQSGDSQSAESPNSEQDWKICNPGDHPD QVKTKLRHWAQAVACSVMQSY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08790			Protein of unknown function (D...		Lus10021997 [exp]	0	1
AT1G48120			hydrolases;protein serine/thre...		Lus10008569 [exp]	6.9	1.0000
AT1G67623			F-box family protein (.1)		Lus10022147 [exp]	7.7	1.0000
AT1G26420			FAD-binding Berberine family p...		Lus10023368 [exp]	9.8	1.0000
AT1G71160		KCS7	3-ketoacyl-CoA synthase 7 (.1)		Lus10020662 [exp]	12.5	1.0000
					Lus10033089 [exp]	13.4	1.0000
					Lus10024550 [exp]	13.9	1.0000
AT5G42650		CYP74A, AOS, DD...	DELAYED DEHISCENCE 2, CYTOCHRO...		Lus10021019 [exp]	14.1	0.9661
AT1G18100		MFT, E12A11	MOTHER OF FT AND TFL1, PEBP (p...		Lus10018417 [exp]	14.5	1.0000
					Lus10020110 [exp]	14.8	1.0000
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Lus10028619 [exp]	15.5	1.0000

Compare expression of checked genes

Lus10021997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.