Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04690 896 / 0 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 870 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT3G51550 726 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G39000 591 / 0 Malectin/receptor-like protein kinase family protein (.1) AT1G30570 553 / 0 HERK2 hercules receptor kinase 2 (.1) AT5G38990 551 / 0 Malectin/receptor-like protein kinase family protein (.1) AT5G54380 545 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 534 / 6e-178 Malectin/receptor-like protein kinase family protein (.1) AT3G46290 529 / 1e-176 HERK1 hercules receptor kinase 1 (.1) AT4G39110 525 / 2e-174 Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042537 [exp] 1508 / 0 AT3G04690 942 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10016907 [exp] 810 / 0 AT3G04690 967 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Lus10014185 [exp] 716 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10022728 [exp] 662 / 0 AT3G51550 1184 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10003942 [exp] 542 / 0 AT3G51550 656 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Lus10037887 [exp] 539 / 5e-180 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10028140 [exp] 538 / 5e-180 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10042844 [exp] 536 / 2e-179 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10021632 [exp] 536 / 2e-178 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042500 [exp] 918 / 0 AT3G04690 1036 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.005G055200 [exp] 916 / 0 AT5G28680 1026 / 0.0 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) Potri.008G105500 [exp] 864 / 0 AT3G04690 999 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.010G145600 [exp] 835 / 0 AT3G04690 1027 / 0.0 ANXUR1, Malectin/receptor-like protein kinase family protein (.1) Potri.016G138700 [exp] 721 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 719 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G096000 [exp] 640 / 0 AT3G51550 832 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.011G164700 [exp] 563 / 0 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.001G405500 [exp] 562 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G128000 [exp] 558 / 0 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [flax] [poplar] GBD PF11721 [flax] [poplar] Malectin Malectin domain CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10021998 pacid=23160282 polypeptide=Lus10021998 locus=Lus10021998.g ID=Lus10021998.BGIv1.0 annot-version=v1.0 ATGGCTCCAAAAAATCATCCTACTCTGTTTTTAACTCTTTCCATCTCCTTGATTTTGTTCAACATCTCCGCCGCCGCCGGGGAAAAACTCCCGCCGGCCT TGATGCTGAGTTGCGGGTCGGAAGAACCAGGAACCGACGCAGAAGGCCGGAAATGGGAACTCGACGACAAGTATGTATCCGGAGAAAGTCTGAAAGCTAG AGCTCAATTACAAGACCCAGCGCTTCCTTCCGAGGTCCCATTTATGGACGCTCGGATTTTCCCTTCCGACGGAGGAGGCTACAAGCTCCCGATCCGACCC AAGACCCGGTACTTCCTCCGCTTCTATTTCTACCCGTCGGATTACCTCGATTACAACATCTCCACCTCTTTTTTCACCGTCACCGCCGGCGGATTCACCC TGCTTCAAAACTTCAGCGCCATTCTCACAACTCAGGCGACCACCCAGGCTTACATTTTTAAAGAATACGTTCTCGCTCCCATAAATTCGGACGGTCTGGA TCTCGCGATTAAACCGGAGAAATACGACGCCGCTTTCGCATTTATCAACGGGATCGAGCTGGTCCCCATGCCTCCCGAAATGTTCGGGAGCGTACGGATG GTCGGGTTCGAAGAGACGGACATACAGACGGAGACGGCGACGATGGAGACTATGTACCGGCTGAACGTCGGCGGCGCGTTGGTGACGTCGACGAAAGATT CAGACGGGATGGGGAGGACTTGGTACCAGGATTCGATGTATATGACCGACACGGGAATAGGAGTGACGAATGAGGCTCCGGAGAAGACCCGACTTAATTT CGATCGGATCCCTAACTACATCGCGCCGGCGGAGGTGTACGAAACGAGCAGAAGTATGGGGGAGGATGGCGCAGTGAATCTCAAATACAATCTGACGTGG CGATTCGCGGTGGATCAGAATTTCACCTACGTGGTTAGGTTTCAATTCTGCGACTGGCAAATTGGTTTGCCCAACCAGAAGCCTTTCAACATCTATATCA ACAACCAAACCGCCCAGGGAAACGAGTTTCCCATGGATCTCTTCGCCATGGCCGGAAAAGGAGTTCCCATATACAAGGACTTCGGTATGTTCGTCGGTGA CAAACCCGGCGAGGAACAAGGGACGGTCTTGGTCCAGCTCCATCCGTCCATCGTCGCCCACCCCGAGTACTTCGACGCCAGTCTGAACGGGCTAGAGATT TTCAAGATGCCCGCATCGGGTAAAATCTTAGCAGGTCGGAACCCAGAATTGTCGAAGATGCTGGCACATGACGTGGAGTTGGTGGCAGAGGCGAAGAGAA AGCAGAGCTTCCGGTCCCACAACGCCGCGATAGTCGGAGCGGCTGCTGGAGGGGCCGCCGGTTTCTGCTTGGTCGCGGTGGTTTTCGTCGTCGTCTGCCG CAAAAAGAAGAACGGAGCCCATGGGGGCCCACACGGGTCCAGCTGGCTACCCCTCCATGGAAGCTCCCGGAGCAGTACTAACAATAGCTCCGGCGGTAGC AATCACTTGGCATCTCTGGCGCAAGGACTCTGCCGGCGGTTCTCTTTGGTGGAGATCAAAAGAGCGACCCACAACTTCCACGACTCCAACGAGATTGGAG TTGGAGGGTTCGGGAAAGTCTATAAGGGCTCAATCGACAACGGTTCGCTCCAGGTGGCAATCAAGCGGTCCAACCCCGATTCGGAGCAAGGGATAGACGA GTTCCAAACCGAAATCGAAATGTTATCCAAGCTCAGACACAAACATCTGGTGTCCCTAATCGGATTCTGCGAGGAAGACGGCGAGATGTGCTTGGTCTAC GACTACATGTCGCAGGGGACAATGCGAGAACACTTATACGACTCAAAAAGAAACCCCACGGGAGCGCTTCATTGGAAGCAACGCCTCGAGATTTGCATCG GAGCGGCCAGAGGCCTGCATTACTTACACACAGGAGCCAAATACACCATCATCCACCGCGACGTGAAGACCACGAACATCCTGCTGGACGATAAGTGGAC GGCGAAGGTGTCCGATTTCGGGCTGTCGAAAACAGGTCCCAACATGGAGAACGGGGCGGTGAGCACGGTGGTGAAAGGGAGCTTCGGGTACTTGGATCCG GAGTACTTCAGGAGGCAGCAACTGACCGAGAAATCAGATGTTTATTCATTTGGAGTGGTTCTGTTCGAAGCATTGTGCGCTAGGCCGGCGTTGAACCCGA GCCTACCGAAGGAGCAAGTGAGCCTGGCGGACTGGGCGATGGCATGCAAGAGGAACGGTAAGCTGGGAGAGTTGATCGATCCGAACATCAAGGGGACGAT TAAGGAAGGATGCTTGAAGAAATTCGCGGACACGGCGGAGAAGTGTTTGAATGAATCAGGGGTGGAGAGGCCTGGGATGGGGGATGTGCTGTGGAATTTG GAGTTTGCTTTGCAGTTGCAGGAGGAAGGTGGGGAGAGTAATGCTTAA
AA sequence Show only first row Show all	>Lus10021998 pacid=23160282 polypeptide=Lus10021998 locus=Lus10021998.g ID=Lus10021998.BGIv1.0 annot-version=v1.0 MAPKNHPTLFLTLSISLILFNISAAAGEKLPPALMLSCGSEEPGTDAEGRKWELDDKYVSGESLKARAQLQDPALPSEVPFMDARIFPSDGGGYKLPIRP KTRYFLRFYFYPSDYLDYNISTSFFTVTAGGFTLLQNFSAILTTQATTQAYIFKEYVLAPINSDGLDLAIKPEKYDAAFAFINGIELVPMPPEMFGSVRM VGFEETDIQTETATMETMYRLNVGGALVTSTKDSDGMGRTWYQDSMYMTDTGIGVTNEAPEKTRLNFDRIPNYIAPAEVYETSRSMGEDGAVNLKYNLTW RFAVDQNFTYVVRFQFCDWQIGLPNQKPFNIYINNQTAQGNEFPMDLFAMAGKGVPIYKDFGMFVGDKPGEEQGTVLVQLHPSIVAHPEYFDASLNGLEI FKMPASGKILAGRNPELSKMLAHDVELVAEAKRKQSFRSHNAAIVGAAAGGAAGFCLVAVVFVVVCRKKKNGAHGGPHGSSWLPLHGSSRSSTNNSSGGS NHLASLAQGLCRRFSLVEIKRATHNFHDSNEIGVGGFGKVYKGSIDNGSLQVAIKRSNPDSEQGIDEFQTEIEMLSKLRHKHLVSLIGFCEEDGEMCLVY DYMSQGTMREHLYDSKRNPTGALHWKQRLEICIGAARGLHYLHTGAKYTIIHRDVKTTNILLDDKWTAKVSDFGLSKTGPNMENGAVSTVVKGSFGYLDP EYFRRQQLTEKSDVYSFGVVLFEALCARPALNPSLPKEQVSLADWAMACKRNGKLGELIDPNIKGTIKEGCLKKFADTAEKCLNESGVERPGMGDVLWNL EFALQLQEEGGESNA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10021998 [exp]	0	1
AT5G46050		ATPTR3, PTR3	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10023743 [exp]	14.1	0.7341
AT2G04040		ATDTX1	detoxification 1, MATE efflux ...		Lus10009132 [exp]	14.7	0.6790
AT1G09290			unknown protein		Lus10012754 [exp]	21.2	0.6631
					Lus10011199 [exp]	22.8	0.5780
AT3G63480			ATP binding microtubule motor ...		Lus10029983 [exp]	24.2	0.6885
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014079 [exp]	24.3	0.6018
AT4G05030			Copper transport protein famil...		Lus10039093 [exp]	26.1	0.6517
					Lus10000289 [exp]	26.2	0.6092
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10017841 [exp]	30.0	0.6637
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10011577 [exp]	30.6	0.6140

Compare expression of checked genes

Lus10021998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.