Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G28650 278 / 1e-92 WRKY ATWRKY74, WRKY74 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) AT3G04670 254 / 3e-83 WRKY ATWRKY39, WRKY39 WRKY DNA-binding protein 39 (.1.2) AT2G30590 194 / 5e-59 WRKY WRKY21 WRKY DNA-binding protein 21 (.1) AT4G31550 169 / 3e-50 WRKY ATWRKY11, WRKY11 WRKY DNA-binding protein 11 (.1.2) AT2G24570 165 / 1e-48 WRKY ATWRKY17, WRKY17 WRKY DNA-binding protein 17 (.1) AT4G24240 162 / 3e-47 WRKY ATWRKY7, WRKY7 WRKY DNA-binding protein 7 (.1) AT2G23320 160 / 6e-47 WRKY WRKY15 WRKY DNA-binding protein 15 (.1.2) AT1G29280 107 / 3e-27 WRKY ATWRKY65, WRKY65 WRKY DNA-binding protein 65 (.1) AT3G58710 104 / 6e-26 WRKY ATWRKY69, WRKY69 RABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 69, WRKY DNA-binding protein 69 (.1.2) AT2G34830 105 / 2e-25 WRKY ATWRKY35, WRKY35, MEE24 maternal effect embryo arrest 24, WRKY DNA-binding protein 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042538 [exp] 513 / 0 AT5G28650 301 / 7e-102 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 74, WRKY DNA-binding protein 74 (.1) Lus10033857 [exp] 226 / 8e-72 AT3G04670 362 / 3e-124 WRKY DNA-binding protein 39 (.1.2) Lus10024864 [exp] 210 / 8e-66 AT2G30590 325 / 7e-110 WRKY DNA-binding protein 21 (.1) Lus10014745 [exp] 190 / 8e-58 AT3G04670 362 / 2e-124 WRKY DNA-binding protein 39 (.1.2) Lus10020136 [exp] 168 / 1e-49 AT4G31550 401 / 8e-141 WRKY DNA-binding protein 11 (.1.2) Lus10041600 [exp] 167 / 4e-49 AT2G23320 276 / 2e-91 WRKY DNA-binding protein 15 (.1.2) Lus10026936 [exp] 162 / 2e-47 AT4G31550 409 / 1e-143 WRKY DNA-binding protein 11 (.1.2) Lus10010053 [exp] 159 / 4e-46 AT4G24240 303 / 1e-101 WRKY DNA-binding protein 7 (.1) Lus10006261 [exp] 150 / 1e-42 AT2G23320 273 / 2e-90 WRKY DNA-binding protein 15 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G055300 [exp] 281 / 2e-93 AT3G04670 361 / 1e-124 WRKY DNA-binding protein 39 (.1.2) Potri.013G042600 [exp] 278 / 4e-92 AT3G04670 333 / 1e-113 WRKY DNA-binding protein 39 (.1.2) Potri.002G043500 [exp] 247 / 3e-80 AT2G30590 345 / 1e-117 WRKY DNA-binding protein 21 (.1) Potri.005G219500 [exp] 196 / 2e-60 AT2G30590 352 / 3e-120 WRKY DNA-binding protein 21 (.1) Potri.018G008500 [exp] 168 / 1e-49 AT4G31550 315 / 1e-106 WRKY DNA-binding protein 11 (.1.2) Potri.018G139300 [exp] 166 / 4e-49 AT4G31550 284 / 5e-95 WRKY DNA-binding protein 11 (.1.2) Potri.003G111900 [exp] 166 / 5e-49 AT2G30590 154 / 5e-44 WRKY DNA-binding protein 21 (.1) Potri.014G024200 [exp] 164 / 6e-48 AT4G24240 261 / 8e-85 WRKY DNA-binding protein 7 (.1) Potri.001G121300 [exp] 163 / 7e-48 AT4G31550 145 / 5e-41 WRKY DNA-binding protein 11 (.1.2) Potri.006G072400 [exp] 162 / 8e-48 AT4G31550 297 / 3e-100 WRKY DNA-binding protein 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10533 [flax] [poplar] Plant_zn_clust Plant zinc cluster domain CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10021999 pacid=23160245 polypeptide=Lus10021999 locus=Lus10021999.g ID=Lus10021999.BGIv1.0 annot-version=v1.0 ATGGAAGGAGTTGAGGAAGCAAGCAAAGAGGCTGTTGAGAGCTGCTACAGGGTTTTGGGGCTCATCTGTCACCCAATAGAAGACCAATCTGTTCAAGCAA CCAACTTGGTGGCTGAAACTGGAGATACAGTGCTCAAATTCAAGAGGGTTGTGTCTCTCTTGAGCAATACTGGCTTAGTTGGTCGTGGCAGATTCAGAAA GCAGCTGAATAAGTTGTTCAAGTCGTCATCTTTACCTCATACCATTTTCCTTGATTATGATGATGGTAGCATATCTACTACAACTGTAACAACAGAAATC CTCGCACCAAGGCCTCTCCAGATTGTGCCTCCACCTAATAATACCAGTTTCGTCCCAACCCGGTTTCCCGATCCAAGAATGATGATGTTTCAGCAGCAGA ATCAACAGAAACTGAAGTATGATCATCAGGCTGAGATGATGATGAAGTTTGACCATGGTGGGTCCGAGTCAACCACAACTAGGTCTTTCATGTCATCTCT GAGAATGGGTGGTGGTGGTTCTGATTCTTTCCATCTGATTGGAATTCCTCGGTCTTCCTCATACAACCACCAGCATAATAGGAGGTGTTCTTCTGGGAGT GTCAAGTGTGGTGCAAGTGCTGCTGCTGCTACTTCTTCTGGGAAATGCCATTGCTCTAAGAAGAGGAAACTGAGAGTGAAGAGATCCATAAAGGTGCCTG CAATAAGCAACAAGGTTGCTGACATTCCTCCTGATGAGTACTCCTGGAGGAAATATGGGCAGAAGCCAATAAAGGGCTCCCCATATCCTAGGGGATATTA CAAGTGCAGCAGCCTAAGAGGGTGCCCGGCCAGGAAGCATGTGGAGAGGTGTCTGGAAGAACCAGCAATGCTGATTGTGACTTATGAAGGAGACCATAAC CATTCCAGATTGTTTACTTCATCTTCTTCAATGTCTGCACTTACATAA
AA sequence Show only first row Show all	>Lus10021999 pacid=23160245 polypeptide=Lus10021999 locus=Lus10021999.g ID=Lus10021999.BGIv1.0 annot-version=v1.0 MEGVEEASKEAVESCYRVLGLICHPIEDQSVQATNLVAETGDTVLKFKRVVSLLSNTGLVGRGRFRKQLNKLFKSSSLPHTIFLDYDDGSISTTTVTTEI LAPRPLQIVPPPNNTSFVPTRFPDPRMMMFQQQNQQKLKYDHQAEMMMKFDHGGSESTTTRSFMSSLRMGGGGSDSFHLIGIPRSSSYNHQHNRRCSSGS VKCGASAAAATSSGKCHCSKKRKLRVKRSIKVPAISNKVADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSSLRGCPARKHVERCLEEPAMLIVTYEGDHN HSRLFTSSSSMSALT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G28650	WRKY	ATWRKY74, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10021999 [exp]	0	1
					Lus10024213 [exp]	2.2	0.8756
AT5G28650	WRKY	ATWRKY74, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10042538 [exp]	4.9	0.8735
					Lus10002061 [exp]	5.9	0.8367
AT5G23100			Protein of unknown function, D...		Lus10027241 [exp]	9.4	0.7777
AT3G52490			Double Clp-N motif-containing ...		Lus10016966 [exp]	10.2	0.8478
AT5G62890			Xanthine/uracil permease famil...		Lus10010707 [exp]	12.5	0.8403
AT2G32010		CVL1	CVP2 like 1 (.1.2)		Lus10006597 [exp]	13.4	0.7929
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Lus10002213 [exp]	15.7	0.8175
AT3G52490			Double Clp-N motif-containing ...		Lus10028849 [exp]	15.9	0.8226
AT1G73850			Protein of unknown function (D...		Lus10038936 [exp]	20.8	0.7935

Compare expression of checked genes

Lus10021999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.