Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04650 558 / 0 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G56000 129 / 9e-33 FAD/NAD(P)-binding oxidoreductase family protein (.1) AT1G55980 98 / 1e-21 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042542 [exp] 882 / 0 AT3G04650 585 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10039206 [exp] 115 / 6e-28 AT1G56000 526 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Lus10013734 [exp] 104 / 2e-24 AT1G56000 497 / 4e-177 FAD/NAD(P)-binding oxidoreductase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G055800 [exp] 581 / 0 AT3G04650 657 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1) Potri.001G438500 [exp] 126 / 7e-32 AT1G56000 528 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022002 pacid=23160259 polypeptide=Lus10022002 locus=Lus10022002.g ID=Lus10022002.BGIv1.0 annot-version=v1.0 ATGGCCGCCTTCTCCATTTCCAACTCATCAACATCTTCCCTACTTCTTCAACCTTTCAACCACCCTGCAACAAAACCCTTCTCCTCCTCTGCTTTGATTT TCACTAAAACCCTGTTCCTGACTCGTGCTTCCTCCAATGATGCAGCCAGCAGCAAACGAAAACCCACTTCCAAGAAAAACAGCAGGAGACCGTTTTCCAG AAGGTCCATTCTCAAGAAATCATTCAATCAAGAGCAGGTCATCTTCACCGCTCCCATCTCCAGCGACCCACACGTAGCAATAATCGGCGGCGGCATGGCC GGTCTTCTTTGCGCCCTGGGTTTGGAGCAACGAGGGTTCAAGTCCACAGTTTTCGACACGGGGATCCATGGGTTGGGAGGGAGGATGGGGACTAGAAACA TTATTAATGGCTCTGCTGATGATGAACTGGTATTTGATCATGCTGCTCAGTTTTTTACGGTAAGTGATCCTCTATTTGGTGAGCTAGTCAATGGTTGGTT GGGGAAAGGTCTGGTTCAAGAATGGAGTGGCAGAATTAGGGAGATTGAGGCTGGTGGTAGTGGGTTTTCCCCATTCCCACCTTCACCTCCGAGATATGTT GGTGTTAATGGAATGAGGTCTCTTGCTGACTCGTTACTCGCACAGAGTGGGTTGATCAATGTCTTCAGACCTTGCTGGATAAGTAAACTAGAGCCGTTTA ATGGGTTGTGGCACCTGAGTGAGAACGGGAAGCCTCGCGGTCAGTTTGATGCCATTGTGATTGCACACAACGGAAAATGTGCAAATCGGTTACTTTCTAC AGCAGGCTTGCCCCTAGTCGCAAGACAAATGAAGCGGCTTGATCTAAGCTCCATATGGGCGCTGATGGCGGCCTTTGACGATCCACTACCCATCCCCTTT GAAGGAGCATTCGTGAAAGGAGTGGATGCATTGTCCTGGATGGGAAACAACTCCAGGAAGCTTGGCAGTAGTGGCAGTAAACAAAGCCGCGAATGCTGGA CATTTTTCAGCACGGCAGCTTTTGGGAAGAAGAACAAAGTTCCACAGGAAAGCATACCAAATGAAACGGGAGAGAAGGTGAAACAGAACATGTTGGAAGG AGTTGAAGCAGTGATGGGAATGGAGAAAGGACAGCTGCCAATACCATCTTATACTAAGCTGCAGCTATGGGGTGCTGCACTGCCGACGAACAGTCCAGGG ATACCGTGCATATTTGATGCGCAGGGAAGGGCTGGAATATGTGGAGATTGGCTTCTGGGTTCGAACATGGAATCAGCAGCCTTGAGTGGCATGGCGCTTG CTAATCATATAGGGAATTACTTTGAAAACGGCAGGGGTGATGGAGAGGAATTCGGAATCGGTCTGCATAACGAATTCCACCAGATTGAAGGACATGACAT AGGCCAGTTCTCAGGGTTGAAAGACGAGCAAGTAACCATGCCAAACTCTGCAGCAGTTATTGGCGACAAAGTTGGCGTTGCTGCTTAG
AA sequence Show only first row Show all	>Lus10022002 pacid=23160259 polypeptide=Lus10022002 locus=Lus10022002.g ID=Lus10022002.BGIv1.0 annot-version=v1.0 MAAFSISNSSTSSLLLQPFNHPATKPFSSSALIFTKTLFLTRASSNDAASSKRKPTSKKNSRRPFSRRSILKKSFNQEQVIFTAPISSDPHVAIIGGGMA GLLCALGLEQRGFKSTVFDTGIHGLGGRMGTRNIINGSADDELVFDHAAQFFTVSDPLFGELVNGWLGKGLVQEWSGRIREIEAGGSGFSPFPPSPPRYV GVNGMRSLADSLLAQSGLINVFRPCWISKLEPFNGLWHLSENGKPRGQFDAIVIAHNGKCANRLLSTAGLPLVARQMKRLDLSSIWALMAAFDDPLPIPF EGAFVKGVDALSWMGNNSRKLGSSGSKQSRECWTFFSTAAFGKKNKVPQESIPNETGEKVKQNMLEGVEAVMGMEKGQLPIPSYTKLQLWGAALPTNSPG IPCIFDAQGRAGICGDWLLGSNMESAALSGMALANHIGNYFENGRGDGEEFGIGLHNEFHQIEGHDIGQFSGLKDEQVTMPNSAAVIGDKVGVAA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04650			FAD/NAD(P)-binding oxidoreduct...		Lus10022002 [exp]	0	1
AT2G48120		PAC	pale cress protein (PAC) (.1),...		Lus10000662 [exp]	2.0	0.8610
					Lus10006129 [exp]	3.2	0.8840
AT5G19070			SNARE associated Golgi protein...		Lus10021942 [exp]	3.9	0.8510
AT2G24395			chaperone protein dnaJ-related...		Lus10026979 [exp]	4.0	0.8531
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	5.7	0.8545
AT4G35760			NAD(P)H dehydrogenase (quinone...		Lus10028389 [exp]	7.3	0.8354
AT2G35140			DCD (Development and Cell Deat...		Lus10018316 [exp]	9.2	0.8480
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	11.0	0.8384
AT5G55700		BAM4, BMY6	BETA-AMYLASE 6, beta-amylase 4...		Lus10022516 [exp]	11.4	0.8111
AT4G30720		PDE327	PIGMENT DEFECTIVE 327, FAD/NAD...		Lus10022174 [exp]	11.8	0.8218

Compare expression of checked genes

Lus10022002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.