Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G54460 115 / 1e-29 TPX2 (targeting protein for Xklp2) protein family (.1) AT5G28646 108 / 2e-28 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G04630 93 / 1e-21 WDL1 WVD2-like 1 (.1.2.3) AT3G23090 77 / 6e-16 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT2G35880 71 / 1e-13 TPX2 (targeting protein for Xklp2) protein family (.1) AT4G32330 69 / 4e-13 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G25480 63 / 5e-11 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 45 / 4e-05 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042543 [exp] 420 / 6e-149 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10000016 [exp] 173 / 1e-53 AT5G28646 137 / 3e-41 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10005533 [exp] 172 / 1e-51 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 169 / 2e-50 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10021223 [exp] 79 / 2e-16 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10022213 [exp] 77 / 2e-15 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10002915 [exp] 71 / 1e-13 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10016193 [exp] 65 / 2e-11 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 64 / 3e-11 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G042800 [exp] 142 / 2e-39 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.005G055900 [exp] 139 / 3e-38 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G162800 [exp] 94 / 1e-21 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.010G076200 [exp] 93 / 3e-21 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.018G027500 [exp] 72 / 5e-14 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.016G066600 [exp] 70 / 3e-13 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.006G254400 [exp] 69 / 5e-13 AT4G32330 288 / 2e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.006G200400 [exp] 66 / 1e-11 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G053200 [exp] 49 / 3e-06 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G180900 [exp] 44 / 9e-05 AT3G26050 119 / 4e-28 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [flax] [poplar] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Lus10022003 pacid=23160260 polypeptide=Lus10022003 locus=Lus10022003.g ID=Lus10022003.BGIv1.0 annot-version=v1.0 ATGCATGCAGACATGGATAAGAAGCATAAAGGTGTTGCAAAGAAGTCGAAAAACGGTAGTATGCCTCAAGAGAAAGAAACCAAGGAGGACTTGGATGTGT TAGGAGTGAAGAACATGAATAATGGTAGTAGTACCCCTCTTTCTGACCAGAAAAGCCAGAAGACAAAAGCTCAGAAGTCAACTGATGGTAAAGTGACAAG CTTTCCCACGCCAAAGTCGTCTCATATCGGTCCAGGAAGCGCCGAATCAATTTCTTTAGAGACTGAAAAGCATAGAGATGTGAAGATATCAGAAAATGAT GAGAAGCACAATGATGAAGATGATAAGAATACAGTTGCTTCCTCGGCAGCTGCATATAAGAATACTAAATTCGCAGTGACTGTTGGCACAGCTCCTACAT TTAAATCTGCTGAGCGTGCCCAAAAGCGCAAGGAGTACTATACGAAATTGGAGGGAAAACGGAAAGCTCTCGAGGCTGAGAAAGCTCAGGCTGAGGCCAG GAACAAGGAAGAGCAACAAGCAGCGATCCGACAGATGAGAAAGAACATGATCTTCAAAGCGAACCCAGTCCCGAATTTCTACTATGAGCCACCTCCACCA ACGGTTGAACTCAAGAAGCTGCCGTTGACGCGGCCTGTGTCGCCAAAGCTAAACCGGAGAAAGAGCTGCGGCGACCTGGTCGACACATCTCAGGCGCAAC AAGTCAGCAGCAAGCACTGTGCCAAGCATCATGAAAGCCTCGGTCCGGACCATAATGAATCTCCATTTGCAACAAGAGCCAATAATCTTCGTCGCACACA GACCGCAAAGGCGAAAAGCTGTTCCGGGTTTGAACAAGAAGAACATCAGGACGTCAGTGAAACCAATGATGGTCCTGAAGAGGTCAACAATGAGCAACCG AGCGCCGATGTTTCTGTTGAGTCATGA
AA sequence Show only first row Show all	>Lus10022003 pacid=23160260 polypeptide=Lus10022003 locus=Lus10022003.g ID=Lus10022003.BGIv1.0 annot-version=v1.0 MHADMDKKHKGVAKKSKNGSMPQEKETKEDLDVLGVKNMNNGSSTPLSDQKSQKTKAQKSTDGKVTSFPTPKSSHIGPGSAESISLETEKHRDVKISEND EKHNDEDDKNTVASSAAAYKNTKFAVTVGTAPTFKSAERAQKRKEYYTKLEGKRKALEAEKAQAEARNKEEQQAAIRQMRKNMIFKANPVPNFYYEPPPP TVELKKLPLTRPVSPKLNRRKSCGDLVDTSQAQQVSSKHCAKHHESLGPDHNESPFATRANNLRRTQTAKAKSCSGFEQEEHQDVSETNDGPEEVNNEQP SADVSVES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G54460			TPX2 (targeting protein for Xk...		Lus10022003 [exp]	0	1
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010799 [exp]	1.4	0.9316
AT3G48950			Pectin lyase-like superfamily ...		Lus10039279 [exp]	1.7	0.7647
AT4G21690		ATGA3OX3	ARABIDOPSIS THALIANA GIBBERELL...		Lus10013134 [exp]	4.9	0.8009
AT4G24580		REN1	ROP1 ENHANCER 1, Rho GTPase ac...		Lus10005733 [exp]	8.5	0.7504
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10024186 [exp]	8.8	0.7392
					Lus10027457 [exp]	9.5	0.7412
					Lus10014650 [exp]	13.3	0.7200
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Lus10013268 [exp]	14.7	0.6972
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10003345 [exp]	15.5	0.6972
AT3G12500		PR-3, PR3, CHI-...	PATHOGENESIS-RELATED 3, basic ...		Lus10003585 [exp]	16.2	0.6972

Compare expression of checked genes

Lus10022003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.