Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37690 854 / 0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) AT2G05140 211 / 5e-65 phosphoribosylaminoimidazole carboxylase family protein / AIR carboxylase family protein (.1) AT5G35360 46 / 8e-05 CAC2 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042546 [exp] 1185 / 0 AT2G37690 907 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) Lus10005526 [exp] 302 / 5e-96 AT2G37690 271 / 2e-84 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) Lus10017534 [exp] 44 / 0.0003 AT5G35360 892 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Lus10028753 [exp] 44 / 0.0004 AT5G35360 888 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G012300 [exp] 915 / 0 AT2G37690 885 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) Potri.013G043500 [exp] 894 / 0 AT2G37690 867 / 0.0 phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative (.1) Potri.006G078200 [exp] 50 / 3e-06 AT5G35360 926 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3) Potri.018G146300 [exp] 43 / 0.0007 AT5G35360 911 / 0.0 acetyl Co-enzyme a carboxylase biotin carboxylase subunit (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0224 [flax] [poplar] DHQS PF00731 [flax] [poplar] AIRC AIR carboxylase CL0179 [flax] [poplar] ATP-grasp PF02222 [flax] [poplar] ATP-grasp ATP-grasp domain
Representative CDS sequence Show only first row Show all	>Lus10022004 pacid=23160236 polypeptide=Lus10022004 locus=Lus10022004.g ID=Lus10022004.BGIv1.0 annot-version=v1.0 ATGCTTCAACGGATTGTTCCCAACAATTTCCACTCTTTCGCAGCAGCCTCAGATTTCTGCTCACTCAAGGCTTCTTTCTTTCCTCCCTTCACCACTCAAT CTTTCTCCCTCGCCATGGACAACACGGACAAACACAAGTACTCATTTCAGTCCCCCTTTGCTTCAAATCCATTGTCGCTGCAAAATCAGTCTCATCCTCC TCAAAATCAAGTCGTGGCCTGTCGAGCTTCTCATTCCACTTCTAGGAGTGGTGATGATGAAGCAGTGGCTGTTCATGGGGTATCTGAGACAGTGGTGGGT GTTTTAGGAGGGGGTCAATTGGGGAGGATGCTTTGCCAGTCAGGATCGGAGATGGCCATCAAAGTTATAGTTTTAGACCCTCTTGTTGGCTGCCCTGCTA GCTCCATTGCTCATGATCATATGGTTGGGAGCTTCGATGACAGTGCTACAGTTGAGGAGTTCGCCAAGAGATGTGGAGTGTTGACTGTTGAAATTGAGCA CGTTGATGTTGCTACTCTGGAGAGGCTTGAGCAGCAAGGTGTTGACTGCCAACCGAAAGCCTCCACCATTCGAATCATACAAGACAAGTATCTTCAGAAG GTTCATTTCTCTCAACACGGGATTCCACTACCCGAGTTTATGCAGATAGATGACCTACAAGGTGCCGTGAGAGCAGGCGATTTGTTTGGTTATCCTCTGA TGATTAAAAGCAAACGGTTAGCATATGATGGACGAGGAAATGCAGTAGCTAAGAGTAAAGAGGAGCTTTCTTCTGCTGTGGCATTGCTTGGAGGATTTTT CCGTGGTTTGTATGTTGAAAAATGGGCGCCCTTTGTGAAAGAGTTAGCAGTAATTGTGGTGAGAGGCAGAGACAATTCTATAGTGTGCTATCCTGTGGTT GAAACTATTCACAAGGAAAACATATGTCACATAGTAAAGGCACCGGCTGTTGTGCCATGGAAAGTTAGGCAGCTGGCCACCGATGTTGCACGTAAAGCTG TTAGTTCTCTAGAAGGTGCTGGTGTTTTTGCAGTTGAGCTGTTTTTGACAAGTGATGGCCAGATTCTTCTAAATGAAGTAGCTCCGAGACCTCATAACAG CGGTCATCACACAATCGAAGCTTGCTATACCTCGCAATTCGAGCAACATTTACGAGCTGTTCTGGGGCTTCCTCTCGGTGATCCATCAATGAAGACTCCA GCTGCAATAATGTACAATCTACTAGGTGAAGAGGAGGGAGAAGGGGGTTTCCACTTGGCTCATCAGCTTATCGGAAAGGCATTGACTATACCAGGAGCTA ACGTTCATTGGTATGACAAGCCAGAAATGCGAAAGCAACGCAAAATGGGTCATATCACTATAGTTGGCCCTTCGATGGGCACGGTTGAAGCTCGGATGAA TTCTATGTTGAGTGAGCGAGGTTCCAGTAATCACTCTGTGGCTGCAGCGCCACGTGTTGGGATCATTATGGGCTCGGATTCGGACCTTCCTGTAATGAAA GATGCTTCAAGAATATTGACGATGTTTGGTGTTCCACATGAGGTCAGAATAGTATCCGCACATCGAACTCCGGAGCTGATGTGCTCTTACGCTTCATCTG CTCGGGACAATGGTCTTCAGTTGATCATTGCCGGTGCTGGTGGAATGGTAGCTTCGCTTACTCCACTGCCTGTTATCGGTGTACCAGTGCGTTCTTCTTC TCTCGACGGAATGGATTCGCTCCTATCGATTGTGCAGATGCCGAGAGGTGTACCTGTTGCAACCGTCGCGATAAACAACAATGCAGGTCTGCTGGCCGTC AGGATATTGGGGGCTGGCGATCCCGATCTATTAGCCAGGATCAGCCAGTATCAAGAAGACACAAGAAATGAAGTGTTGAAGAAAGCTGAAAAGCTGGAGA GTGAGGGCTGGGAGTCCTACTTGAATCCTTGA
AA sequence Show only first row Show all	>Lus10022004 pacid=23160236 polypeptide=Lus10022004 locus=Lus10022004.g ID=Lus10022004.BGIv1.0 annot-version=v1.0 MLQRIVPNNFHSFAAASDFCSLKASFFPPFTTQSFSLAMDNTDKHKYSFQSPFASNPLSLQNQSHPPQNQVVACRASHSTSRSGDDEAVAVHGVSETVVG VLGGGQLGRMLCQSGSEMAIKVIVLDPLVGCPASSIAHDHMVGSFDDSATVEEFAKRCGVLTVEIEHVDVATLERLEQQGVDCQPKASTIRIIQDKYLQK VHFSQHGIPLPEFMQIDDLQGAVRAGDLFGYPLMIKSKRLAYDGRGNAVAKSKEELSSAVALLGGFFRGLYVEKWAPFVKELAVIVVRGRDNSIVCYPVV ETIHKENICHIVKAPAVVPWKVRQLATDVARKAVSSLEGAGVFAVELFLTSDGQILLNEVAPRPHNSGHHTIEACYTSQFEQHLRAVLGLPLGDPSMKTP AAIMYNLLGEEEGEGGFHLAHQLIGKALTIPGANVHWYDKPEMRKQRKMGHITIVGPSMGTVEARMNSMLSERGSSNHSVAAAPRVGIIMGSDSDLPVMK DASRILTMFGVPHEVRIVSAHRTPELMCSYASSARDNGLQLIIAGAGGMVASLTPLPVIGVPVRSSSLDGMDSLLSIVQMPRGVPVATVAINNNAGLLAV RILGAGDPDLLARISQYQEDTRNEVLKKAEKLESEGWESYLNP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37690			phosphoribosylaminoimidazole c...		Lus10022004 [exp]	0	1
AT1G24090			RNase H family protein (.1)		Lus10033508 [exp]	1.7	0.9197
AT2G37690			phosphoribosylaminoimidazole c...		Lus10042546 [exp]	3.7	0.9303
AT1G63810			unknown protein		Lus10026014 [exp]	6.5	0.9248
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	11.7	0.9115
AT2G18900			Transducin/WD40 repeat-like su...		Lus10003637 [exp]	14.7	0.9114
AT3G11964			RNA binding;RNA binding (.1)		Lus10016216 [exp]	14.7	0.9100
AT2G18220			Noc2p family (.1)		Lus10027010 [exp]	15.2	0.9045
AT1G10490			Domain of unknown function (DU...		Lus10006807 [exp]	21.0	0.9019
AT4G34910			P-loop containing nucleoside t...		Lus10015433 [exp]	21.6	0.8973
AT1G08130		ATLIG1	DNA ligase 1 (.1)		Lus10021418 [exp]	21.8	0.9017

Compare expression of checked genes

Lus10022004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.