Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56710 44 / 3e-06 SIB1 sigma factor binding protein 1 (.1) AT2G41180 41 / 4e-05 SIB2 sigma factor binding protein 2, VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005523 [exp] 76 / 5e-18 ND 46 / 2e-06 Lus10006569 [exp] 74 / 4e-17 ND 44 / 1e-05 Lus10024139 [exp] 45 / 2e-06 AT3G56710 58 / 5e-11 sigma factor binding protein 1 (.1) Lus10039494 [exp] 44 / 8e-06 AT3G56710 56 / 3e-10 sigma factor binding protein 1 (.1) Lus10039493 [exp] 42 / 4e-05 AT3G56710 54 / 1e-09 sigma factor binding protein 1 (.1) Lus10026165 [exp] 39 / 0.0002 AT3G56710 44 / 3e-06 sigma factor binding protein 1 (.1) Lus10008659 [exp] 39 / 0.0002 ND 44 / 4e-06
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G043800 [exp] 61 / 1e-12 AT2G41180 / sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.016G093900 [exp] 61 / 2e-12 AT2G41180 / sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.019G013300 [exp] 58 / 1e-11 AT2G41180 47 / 3e-07 sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.019G013750 [exp] 58 / 1e-11 AT3G56710 46 / 7e-07 sigma factor binding protein 1 (.1) Potri.003G194700 [exp] 49 / 5e-08 AT3G56710 54 / 6e-10 sigma factor binding protein 1 (.1) Potri.006G038900 [exp] 48 / 1e-07 AT2G41180 56 / 2e-10 sigma factor binding protein 2, VQ motif-containing protein (.1) Potri.001G029700 [exp] 48 / 1e-07 AT3G56710 54 / 5e-10 sigma factor binding protein 1 (.1) Potri.016G036600 [exp] 46 / 9e-07 AT3G56710 48 / 2e-07 sigma factor binding protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [flax] [poplar] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Lus10022005 pacid=23160239 polypeptide=Lus10022005 locus=Lus10022005.g ID=Lus10022005.BGIv1.0 annot-version=v1.0 ATGGACAAGTTGACCAAAATCAACGGCAACAATCACGACAATGACAACAGTCACGAACTCGTCCGACCAGCCACGAAACAGAGCAGCAGCAACAACAAGA AGAATTCAAAGGAGAAGCCGCTCAAGATCACTTACATCTCCAGTCCAACCTTAGTAAGAGCCACAACCGCTTCCAAGTTTCGAGCTCTGGTTCAAGAGCT CACCGGCAAGAATTCCCGTCTTGGAGAAGAAGATGATGATGACTACTACTTTGAGGGTAATCGTACGCCGCAGCCGCCGGCGGAGGATGGGCATTTGTTT CCGAATGGCGGCAGTGATGTTACTGCTATGGAGGAAGGGGGATTCCCTCAGTGGAGAGGTGTTAATGGTGGGATTCACTACTACTCTTCCAATTACTCGT TTGTGTAA
AA sequence Show only first row Show all	>Lus10022005 pacid=23160239 polypeptide=Lus10022005 locus=Lus10022005.g ID=Lus10022005.BGIv1.0 annot-version=v1.0 MDKLTKINGNNHDNDNSHELVRPATKQSSSNNKKNSKEKPLKITYISSPTLVRATTASKFRALVQELTGKNSRLGEEDDDDYYFEGNRTPQPPAEDGHLF PNGGSDVTAMEEGGFPQWRGVNGGIHYYSSNYSFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10022005 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10029021 [exp]	1.4	0.9417
AT2G46330		ATAGP16, AGP16	arabinogalactan protein 16 (.1...		Lus10023629 [exp]	2.2	0.9466
AT4G28400			Protein phosphatase 2C family ...		Lus10028094 [exp]	2.4	0.9293
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10034244 [exp]	3.2	0.9263
AT4G27280			Calcium-binding EF-hand family...		Lus10018511 [exp]	3.5	0.9005
AT4G33780			unknown protein		Lus10037250 [exp]	4.6	0.9226
AT4G02410			Concanavalin A-like lectin pro...		Lus10033777 [exp]	5.5	0.8967
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Lus10015738 [exp]	6.0	0.9233
AT5G48290			Heavy metal transport/detoxifi...		Lus10016061 [exp]	6.3	0.9268
AT2G22905			Expressed protein (.1)		Lus10012094 [exp]	6.3	0.9225

Compare expression of checked genes

Lus10022005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.