Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14045 124 / 1e-35 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042548 [exp] 152 / 1e-46 AT2G14045 132 / 6e-41 unknown protein Lus10006970 [exp] 123 / 3e-32 AT4G03220 74 / 3e-14 Protein with RNI-like/FBD-like domains (.1) Lus10042550 [exp] 73 / 2e-14 AT5G53840 61 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10006513 [exp] 64 / 2e-11 AT5G02930 80 / 3e-16 F-box/RNI-like superfamily protein (.1) Lus10032255 [exp] 63 / 5e-11 AT5G02930 85 / 6e-18 F-box/RNI-like superfamily protein (.1) Lus10014140 [exp] 54 / 3e-09 ND 36 / 0.002 Lus10029587 [exp] 57 / 6e-09 AT5G02930 74 / 3e-14 F-box/RNI-like superfamily protein (.1) Lus10014141 [exp] 57 / 7e-09 AT3G18150 70 / 5e-13 RNI-like superfamily protein (.1) Lus10029589 [exp] 55 / 3e-08 AT5G02930 71 / 5e-13 F-box/RNI-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014100 [exp] 116 / 1e-32 AT2G14045 142 / 5e-45 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022007 pacid=23160213 polypeptide=Lus10022007 locus=Lus10022007.g ID=Lus10022007.BGIv1.0 annot-version=v1.0 ATGCAAGAGGTATCCTGCGAAAGGACGATTGAAGTTTATGCTCCAAAGCTCAAATCTTTGTTTTTCCAAAGTGATATTGCAAGTTGGAATTGTTTTCCAA AGTTAGACCTTCCTGCCCTCGATCGTGCATACATCCGCATTGAGTGGACTCACATGCTTGAAATGGACAATGGTGCTATTTTGACGGAAAAGGCTAATTG TGCATCTGTATCCTTGTTGAATGGGTTGCATAATGTCGAGTATCTCAAACTCTCCTTCGACTACGACTACCTGCCAAGTGATGCGCAGTACGATCATCCC CTTGCCGGTTTGAAGTCGTTGATGAAGCCTGGAGCCTCTCCCTTCACCAGATTGAAGGCCTTGAAGGTGGAGTATTTAGACGGAACACCGGGTATAATAC CTTATCGAGTGATTGGTTTCTTCTTCGATGGCTCTCCTCATACAGAAGACAAGTCTTTTGAGCTTGAGAAGGAAAAGGAAGCGAAGAAGGAAGCTTTCAG AAAGTACCTTGAATCCAGTGGAGTTGTTGATACCGTCACTAAAGCTCTGGTCGCATTGTACGAGCAAGATGAGAAGCCCTCCTCTGCTCTCGAATTCATT CAACAGAAGTTGGGCGGTCCGAGTGTGTGTGACTACGAGAAGTTACAAGCCGAGATGTCAGACTTGCAACTCAAGTACAATGAGCTTTTGTTAACTCATC AACAGGTTGTCAAAGAGGAACTTTCCAGCCGCCGTCATCATGCCGCGTTTGTTACCATTATCAACCGCCATCAACACGCCTCGCGTAAGGAAGCAAGCGA CGCCATCCAGGTGACTCGGTCAAATGAGTCTCTTGGCTCGATGACAACGAATGGACACTAG
AA sequence Show only first row Show all	>Lus10022007 pacid=23160213 polypeptide=Lus10022007 locus=Lus10022007.g ID=Lus10022007.BGIv1.0 annot-version=v1.0 MQEVSCERTIEVYAPKLKSLFFQSDIASWNCFPKLDLPALDRAYIRIEWTHMLEMDNGAILTEKANCASVSLLNGLHNVEYLKLSFDYDYLPSDAQYDHP LAGLKSLMKPGASPFTRLKALKVEYLDGTPGIIPYRVIGFFFDGSPHTEDKSFELEKEKEAKKEAFRKYLESSGVVDTVTKALVALYEQDEKPSSALEFI QQKLGGPSVCDYEKLQAEMSDLQLKYNELLLTHQQVVKEELSSRRHHAAFVTIINRHQHASRKEASDAIQVTRSNESLGSMTTNGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14045			unknown protein		Lus10022007 [exp]	0	1
AT4G13540			unknown protein		Lus10004393 [exp]	3.6	0.7892
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10015840 [exp]	6.9	0.7511
AT1G07980	CCAAT	NF-YC10	"nuclear factor Y, subunit C10...		Lus10036110 [exp]	8.7	0.7369
AT3G28480			Oxoglutarate/iron-dependent ox...		Lus10014502 [exp]	13.0	0.7758
AT4G26410			Uncharacterised conserved prot...		Lus10035249 [exp]	13.8	0.7575
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10043133 [exp]	16.3	0.7681
AT1G54730			Major facilitator superfamily ...		Lus10029964 [exp]	17.3	0.7874
AT1G65295			unknown protein		Lus10020197 [exp]	18.2	0.7564
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10008088 [exp]	21.9	0.7344
AT2G14045			unknown protein		Lus10042548 [exp]	22.2	0.7103

Compare expression of checked genes

Lus10022007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.