Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04580 928 / 0 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT3G23150 716 / 0 ETR2 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT1G04310 512 / 3e-173 ERS2 ethylene response sensor 2 (.1) AT1G66340 463 / 5e-153 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 346 / 2e-109 ERS1 ethylene response sensor 1 (.1) AT5G35750 81 / 3e-15 AHK2 histidine kinase 2 (.1) AT1G27320 77 / 3e-14 AHK3 histidine kinase 3 (.1) AT2G01830 77 / 3e-14 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT2G17820 62 / 2e-09 AHK1, ATHK1 histidine kinase 1 (.1) AT5G10720 54 / 4e-07 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042549 [exp] 1483 / 0 AT3G04580 944 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10005517 [exp] 1225 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10006574 [exp] 1221 / 0 AT3G04580 957 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Lus10021880 [exp] 857 / 0 AT3G23150 857 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10041159 [exp] 848 / 0 AT3G23150 851 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10021212 [exp] 845 / 0 AT3G23150 890 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10022203 [exp] 838 / 0 AT3G23150 882 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10007357 [exp] 451 / 4e-148 AT1G66340 1211 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Lus10031382 [exp] 448 / 5e-147 AT1G66340 1206 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014300 [exp] 1072 / 0 AT3G04580 959 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.013G044100 [exp] 1066 / 0 AT3G04580 960 / 0.0 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) Potri.010G074300 [exp] 917 / 0 AT3G23150 877 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.008G164400 [exp] 905 / 0 AT3G23150 889 / 0.0 ethylene response 2, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.003G032300 [exp] 459 / 3e-151 AT1G66340 1228 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.001G204200 [exp] 454 / 1e-149 AT1G66340 1216 / 0.0 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) Potri.002G201500 [exp] 361 / 8e-115 AT2G40940 897 / 0.0 ethylene response sensor 1 (.1) Potri.003G171000 [exp] 85 / 1e-16 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.010G102900 [exp] 77 / 3e-14 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.014G164700 [exp] 77 / 4e-14 AT5G35750 1359 / 0.0 histidine kinase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0161 [flax] [poplar] GAF PF01590 [flax] [poplar] GAF GAF domain CL0025 [flax] [poplar] His_Kinase_A PF00512 [flax] [poplar] HisKA His Kinase A (phospho-acceptor) domain CL0304 [flax] [poplar] CheY PF00072 [flax] [poplar] Response_reg Response regulator receiver domain
Representative CDS sequence Show only first row Show all	>Lus10022009 pacid=23160248 polypeptide=Lus10022009 locus=Lus10022009.g ID=Lus10022009.BGIv1.0 annot-version=v1.0 ATGTCGAGAGCATTAGCAATAGGATTCTTGTTGTTGATAACATCATTCATTTCGGCCTACTCAGTATCTGCTGAGGCAGATAACGAGTTCGCGAATTGTA ATTGTGACGACGAAGGAGGAGGATTCTGGACTGTACAGAACATTCTCGAGTGCCAGAGAGTGAGCGATATCTTGATCTTTGTAGCTTATTTTTCAATCCC AATTGAACTCCTTTACTTCGTTAGCTATTCAAACGTTCCCTTCAAGTGGGTTTTCCTCCAGTTCACAGCATTCATATGCCTTTGTGGACTAACTCACTTG CTCAATGCCTGGACTTATTACGGCCCCCACTCGTTCCAGTTAATGCTCTCTCTCACTGTTGCTAAGTTCCTTACGGCTTTGGTTTCGTGCGCCACTGCTA TAACCCTCCTCACTTTGTTCCCCATGCTTCTCAAAATGAAAGTGCGAGAGCTTTACTTGATCCAAAATGTTATGGAGTTGGACCAAGAGGTCGGGATGAT GAAGAAGAAGAAAATAGCTAGCATCCACGTAAGGATGTTGACCCGGGAGATTCGGAAGTCCCTCGACAAGCACAACATACTGTATACAACTCTCGTCGAA CTCTCGAAGACGTTGGATTTGTACAACTGTGCGGTGTGGATGCCGAATGAGAAGAGGACTGAGATGAACCTGACCCACGAGCTACGAGCAAGTTCTTCAG GAAGCCATCAGTTTTCGATCCCTATGAACGACCCTGATTTGTTAGACATAAAAACTACCAAAGGTGTGAAGATTTTGAGGTCAGATTCAGCACTCGGGGC TCTAAGCAACGAGGGGTCCGGTCCTGTGGCTGCAATCAGGATGCCGATGCTTCGAGTTTCTAATTTCAAAGGCGGTACCCCAGAGTTTTTAGATACTTGT TACGCTATCCTGGTTTTGGTCCTTCCGAGTGGCAGTTCGTGGTTCGATGAAGCGATGGAGATAGTGGAAGTTGTTGCTGATCAGGTAGCAGTGGCGTTAT CCCACGCTGCGGTTCTCGAAGAATCTCAGCTGATGAGGGAGCAGTTGAGCGAGCAAAATCGGGCATTGCAACAGGCTAAGATGAACGCAACGATGGCTAG CCAGGCAAGGAACTCGTTCCAAAAGGTGATGAGTCACGGGATGAGGAGACCGATGCACTCGATTATCGGGTTGCTCTCGCTGATCCAGGATGATAATATG ATCTTTGACCAGAAAATCGTAGTCGATACATTGATGAAAGCCAGCAACGTGCTTTCGACTTTGATCAACGACGCAATGGAGATTTCGGTAAAAGATACAG GGAGGTTCCCCATAGAGATGAGGCCTTTTCGGCTACAGTCGATGATCAGGGAAGCTTCCTGCCTTGCCAAGTGCTTGTGTGTACATGAGGGCTTTGGTTT CGAAATCAATGTTCAGAGTTCTTTACCTGATGTAGTTATAGGAGATGAACGAAGAGCTTTCCAATTGATTTTGCATATGTTTGGTTATATGTTGGATATA TACGATGGAAGAGGGACCATCGTATTTCGGGTTTTCTTAGAGAGTCGCGGTGGTAGTGGAGGTGGACAGAATGATAGAATGTTAGGGATGTGGAAAGCAA ATGCTCCTGATGAACTTGCATCTGTGAAATTTGAGATTGAGATTAGAGAGGAAATTTCATCAAAGTCAGATGGCCCTATGTCTGCTGCACAAAGAAGGGT AGCTGGTCCTGAAATCAAGGAAGCTCTTAGGTTCAGCATGTGTAAGAAGCTAGTTCAGATGATGCAAGGGAACATTTGGATATCTCCGAACGCCTTTGGT CTTGTGCGAAGCATGAATCTTGTCCTCAGGTTTCAAACCAGGCCATCATCGATCGGAATAGCTACATTGACCTCCTCAGAACAACTAAACAGTACTGCTC AATTCAACGGCCTGAAGGTTGTGCTTGCCGACGATGACAACGTAAACAGAACCGTGACCAAGAAGTTGCTTGAAAAGTTGGGATGTGATGTCGCTGCTGT TGCTTCTGGGTTTGAATGCCTCAGCACTCTAAGCTCGGAGAACTCCGTCAGAGTAGTCATTCTGGACCTTCAGATGCCGGAAATGGATGGGTTTGAAGTT GCGACGAGGCTTAGGAAATTCCGGAGCAGGAACTGGCCATTCATTATCGCCCTGACAGCCAGTGCAGAGGATCTTGTATGGGAAAGGTGCCTGCAGGTTG GAATGAATGGAGTGATGCGAAAACCCGTTCTCTTACAGGCTATATCTGACGAACTTCGTAGGGTTCTTCAGGTAGCTGGATAA
AA sequence Show only first row Show all	>Lus10022009 pacid=23160248 polypeptide=Lus10022009 locus=Lus10022009.g ID=Lus10022009.BGIv1.0 annot-version=v1.0 MSRALAIGFLLLITSFISAYSVSAEADNEFANCNCDDEGGGFWTVQNILECQRVSDILIFVAYFSIPIELLYFVSYSNVPFKWVFLQFTAFICLCGLTHL LNAWTYYGPHSFQLMLSLTVAKFLTALVSCATAITLLTLFPMLLKMKVRELYLIQNVMELDQEVGMMKKKKIASIHVRMLTREIRKSLDKHNILYTTLVE LSKTLDLYNCAVWMPNEKRTEMNLTHELRASSSGSHQFSIPMNDPDLLDIKTTKGVKILRSDSALGALSNEGSGPVAAIRMPMLRVSNFKGGTPEFLDTC YAILVLVLPSGSSWFDEAMEIVEVVADQVAVALSHAAVLEESQLMREQLSEQNRALQQAKMNATMASQARNSFQKVMSHGMRRPMHSIIGLLSLIQDDNM IFDQKIVVDTLMKASNVLSTLINDAMEISVKDTGRFPIEMRPFRLQSMIREASCLAKCLCVHEGFGFEINVQSSLPDVVIGDERRAFQLILHMFGYMLDI YDGRGTIVFRVFLESRGGSGGGQNDRMLGMWKANAPDELASVKFEIEIREEISSKSDGPMSAAQRRVAGPEIKEALRFSMCKKLVQMMQGNIWISPNAFG LVRSMNLVLRFQTRPSSIGIATLTSSEQLNSTAQFNGLKVVLADDDNVNRTVTKKLLEKLGCDVAAVASGFECLSTLSSENSVRVVILDLQMPEMDGFEV ATRLRKFRSRNWPFIIALTASAEDLVWERCLQVGMNGVMRKPVLLQAISDELRRVLQVAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04580		EIN4	ETHYLENE INSENSITIVE 4, Signal...		Lus10022009 [exp]	0	1
AT5G25265			unknown protein		Lus10005347 [exp]	8.2	0.8717
AT3G05290		AtPNC1, PNC1	peroxisomal adenine nucleotide...		Lus10031510 [exp]	16.6	0.8770
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	18.3	0.8551
AT3G13840	GRAS		GRAS family transcription fact...		Lus10000532 [exp]	20.8	0.8605
AT2G21190			ER lumen protein retaining rec...		Lus10012176 [exp]	21.4	0.8635
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10043112 [exp]	21.5	0.8588
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Lus10001648 [exp]	23.0	0.8586
AT3G47000			Glycosyl hydrolase family prot...		Lus10005871 [exp]	23.7	0.8686
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10011870 [exp]	24.2	0.8493
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10016920 [exp]	25.0	0.8626

Compare expression of checked genes

Lus10022009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.