Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14465 162 / 6e-49 AT-hook AHL20 AT-hook motif nuclear-localized protein 20 (.1) AT3G04570 155 / 1e-45 AT-hook AHL19 AT-hook motif nuclear-localized protein 19 (.1) AT2G35270 146 / 2e-42 AT-hook GIK, 2-ATH, AHL21 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) AT1G76500 140 / 2e-40 AT-hook SOB3, AHL29 SUPPRESSOR OF PHYB-4#3, AT-hook motif nuclear-localized protein 29, Predicted AT-hook DNA-binding family protein (.1) AT4G17800 140 / 5e-40 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT4G22810 140 / 9e-40 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT2G45430 139 / 2e-39 AT-hook AHL22 AT-hook motif nuclear-localized protein 22 (.1) AT4G12050 137 / 2e-38 AT-hook Predicted AT-hook DNA-binding family protein (.1) AT3G60870 134 / 4e-38 AT-hook AHL18 AT-hook motif nuclear-localized protein 18 (.1) AT2G42940 132 / 2e-37 AT-hook Predicted AT-hook DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042551 [exp] 392 / 2e-139 AT3G04570 202 / 4e-64 AT-hook motif nuclear-localized protein 19 (.1) Lus10006577 [exp] 186 / 9e-58 AT3G04570 270 / 1e-89 AT-hook motif nuclear-localized protein 19 (.1) Lus10020763 [exp] 146 / 1e-42 AT2G42940 294 / 1e-100 Predicted AT-hook DNA-binding family protein (.1) Lus10000519 [exp] 144 / 2e-41 AT2G35270 205 / 1e-64 GIANT KILLER, Predicted AT-hook DNA-binding family protein (.1) Lus10002711 [exp] 141 / 3e-40 AT4G14465 211 / 1e-66 AT-hook motif nuclear-localized protein 20 (.1) Lus10031460 [exp] 133 / 1e-38 AT2G42940 214 / 1e-70 Predicted AT-hook DNA-binding family protein (.1) Lus10031458 [exp] 127 / 3e-36 AT2G42940 212 / 1e-69 Predicted AT-hook DNA-binding family protein (.1) Lus10009301 [exp] 125 / 3e-34 AT3G60870 223 / 4e-72 AT-hook motif nuclear-localized protein 18 (.1) Lus10015862 [exp] 124 / 8e-34 AT3G60870 227 / 1e-73 AT-hook motif nuclear-localized protein 18 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044500 [exp] 204 / 3e-65 AT4G14465 162 / 3e-48 AT-hook motif nuclear-localized protein 20 (.1) Potri.008G058700 [exp] 167 / 3e-50 AT3G55560 192 / 5e-59 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.010G074201 [exp] 165 / 6e-50 AT4G14465 256 / 3e-85 AT-hook motif nuclear-localized protein 20 (.1) Potri.014G070800 [exp] 159 / 3e-47 AT2G45430 222 / 5e-71 AT-hook motif nuclear-localized protein 22 (.1) Potri.010G200100 [exp] 159 / 4e-47 AT3G55560 209 / 2e-65 AT-hook motif nuclear-localized protein 15, AT-hook protein of GA feedback 2 (.1) Potri.004G208600 [exp] 145 / 5e-42 AT2G45430 166 / 4e-49 AT-hook motif nuclear-localized protein 22 (.1) Potri.002G149300 [exp] 142 / 4e-41 AT2G45430 226 / 1e-72 AT-hook motif nuclear-localized protein 22 (.1) Potri.008G164466 [exp] 139 / 8e-41 AT4G14465 184 / 3e-58 AT-hook motif nuclear-localized protein 20 (.1) Potri.001G142800 [exp] 140 / 6e-40 AT4G17800 300 / 6e-102 Predicted AT-hook DNA-binding family protein (.1) Potri.001G115200 [exp] 139 / 1e-39 AT4G22810 254 / 1e-83 Predicted AT-hook DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [flax] [poplar] ALDC PF03479 [flax] [poplar] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Lus10022010 pacid=23160287 polypeptide=Lus10022010 locus=Lus10022010.g ID=Lus10022010.BGIv1.0 annot-version=v1.0 ATGTCGAACACCTGGTGGGCAGCCCAAGTAGGCCATCCAAACAAAAACAGTGCTGCCACCCCCAGCCACCCAGATCTCGCCATCTCCATCTATAGCAGCT CCGGTTTCGGCAACGACGACGAAAGGGAGGAGCATAGCGCTGAAGATCCTATAAAGATAGCACTAGCTCCCCGCCGTCCCAGAGGAAGACCGCCGGGATC CAAGAACAGGCCGAAGCCACCGATGTTTGTCTCGAGGGACAGCCCCAATGCCTTCCAGAGCCACATGATGGAGATCGCCAGCGGCTCGGACATCGTGGAG GGCTTGGCTTGCTACGCAAGAAAGCGCCAATGCGGCGTCTGCGTGCTGTCCGGGAAAGGTATGGTTTCCGGCTTGATGATCAAGCAACCTTCGGCCTATG GGACGCCTGCAATATTGTCACTGCGCGGTAGGCTCGAGATCCTCTCCCTCACAGGATCCTTCCTCCCCGAACCGGCTCCTCCCGGAACTAATGGACTCGC CATCTACTGGGCCGGTGAAGAGAGGCAAGTCCTCGGAGGAATCGTGGTGGGTCCGCTTATAGCGAGCGGAGCTGTGATGGTAATGGCAGCTACATTCTCC AATGCTCCTTATGAGAGGCTGCCGTTGGAAGAGGAGGAGAAGGATGGTGGGGCTACATCAATGTCGTCAGGCTACAATTTGATGCAGAACGGAGGACAAT TGAGTACTCAAGCAACAGGGTATGGGTGCAGGGCACCGCCGTTTTGA
AA sequence Show only first row Show all	>Lus10022010 pacid=23160287 polypeptide=Lus10022010 locus=Lus10022010.g ID=Lus10022010.BGIv1.0 annot-version=v1.0 MSNTWWAAQVGHPNKNSAATPSHPDLAISIYSSSGFGNDDEREEHSAEDPIKIALAPRRPRGRPPGSKNRPKPPMFVSRDSPNAFQSHMMEIASGSDIVE GLACYARKRQCGVCVLSGKGMVSGLMIKQPSAYGTPAILSLRGRLEILSLTGSFLPEPAPPGTNGLAIYWAGEERQVLGGIVVGPLIASGAVMVMAATFS NAPYERLPLEEEEKDGGATSMSSGYNLMQNGGQLSTQATGYGCRAPPF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Lus10022010 [exp]	0	1
AT1G71090			Auxin efflux carrier family pr...		Lus10002281 [exp]	12.4	0.6332
					Lus10026821 [exp]	25.3	0.5988
AT2G38840			Guanylate-binding family prote...		Lus10014720 [exp]	72.6	0.5787
AT1G33970			P-loop containing nucleoside t...		Lus10009485 [exp]	88.3	0.5275

Compare expression of checked genes

Lus10022010 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.