Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04560 412 / 2e-142 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042552 [exp] 686 / 0 AT3G04560 465 / 2e-163 unknown protein Lus10035363 [exp] 295 / 9e-100 AT3G04560 215 / 7e-69 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G044600 [exp] 429 / 3e-149 AT3G04560 434 / 4e-151 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022011 pacid=23160227 polypeptide=Lus10022011 locus=Lus10022011.g ID=Lus10022011.BGIv1.0 annot-version=v1.0 ATGGGAGACAACCTTTTCGAAGGGCTTCCCCCTCCTTCTCATAAGCTCACGGAGGATAATCCTCAACCGCCGTCGACGAGCAACTTGGAAGTTGCGCTAG TTCCACCGCCTCCCAAACCAGCTTTGAAGAGCGCACTCAAACGGCCCAAGCCTGTGGAGTCAATCCAAGAGCCGGAAGGATCTGGTGCTGAAAAAGCTGA AGCACCACCTGAAAAGAAGAGGCTGAGGTTCAAAACCACAACTGATGCCTCTGAGCAACAAATTCTAGAAGCAATGCAGAAAATAGCTTCGCATATCAAG AATCCAACCAAGTTTTCAAAGGCTTCGAAGCTTGCTATACAGCTAATTAACTCTGGAGGTGTGAAGCCTGGTACTTGCGACCAGTTCTTTGCCATTCTAG AGAGTGCAATGCTCACAAAAACGTTGTGTACGGATCCTGCTCTTCGTGAAGATTATCATGCTTTGTTCTCGGCAGCACAGGACACTGCTGAATTTCTGAA TAAGAAGCAGAGGCATCAGTTGGAAACTTGGTCGATTATGGCAGTGGTGGCTAATGACTTGTTTACTGATGACAGCTTTGTGTTTTCAAAGGCTGCTACT CGAATAAAGGAGACCATAAGCAATCTACCAGCTGCAACCATGGATGATGATGCAGAGGAAGCTGCAACCCTGGAAGAAGATGAAACTAGGACAGCTGATG GAGATGGAAATTTTGAGCGAGACGATGCATCTGGTGCTGCACCAGTAGAAGAAACTGACAACATTGAGTCTGATCCATTTGGACTTGACGCATTTATTCC CAGCACGGTGAAGAAAGATGCGAAGGTAAAGGCAAAAGGATCCAAGACCAAAACAAGAAAGAACGAGGAGGATAGTGAGTTTGACAGATTTCTCAAATGT CAAAGAGAAGCCTTGATCACTTGCTTAGAGATTGCTGCTCGGCGATACAAGACACCTTGGTGCCAGACAGTGATAGATATTCTAGTGGAGCACGCCCATG ATAACGTCGAGAGTTTTACGTCTCGACAAAGAGATGCCATTGAGAAGCTGTGGGCTTCAATTCGGAAACAACACATTCGTAGGAAGCAAGGAAAGTCTGT GAATGGGAAGCTTGATGTGACTGCTTTTGAGTCGCTGCAGGAGAAGTACTCGACTGAGAAAATCAGTATTCGAAATGCGGTAGGTGGTGGTGGAGAACGC AAAGCCCAGCAATGGCTTGGATGA
AA sequence Show only first row Show all	>Lus10022011 pacid=23160227 polypeptide=Lus10022011 locus=Lus10022011.g ID=Lus10022011.BGIv1.0 annot-version=v1.0 MGDNLFEGLPPPSHKLTEDNPQPPSTSNLEVALVPPPPKPALKSALKRPKPVESIQEPEGSGAEKAEAPPEKKRLRFKTTTDASEQQILEAMQKIASHIK NPTKFSKASKLAIQLINSGGVKPGTCDQFFAILESAMLTKTLCTDPALREDYHALFSAAQDTAEFLNKKQRHQLETWSIMAVVANDLFTDDSFVFSKAAT RIKETISNLPAATMDDDAEEAATLEEDETRTADGDGNFERDDASGAAPVEETDNIESDPFGLDAFIPSTVKKDAKVKAKGSKTKTRKNEEDSEFDRFLKC QREALITCLEIAARRYKTPWCQTVIDILVEHAHDNVESFTSRQRDAIEKLWASIRKQHIRRKQGKSVNGKLDVTAFESLQEKYSTEKISIRNAVGGGGER KAQQWLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04560			unknown protein		Lus10022011 [exp]	0	1
AT5G06590			unknown protein		Lus10021091 [exp]	3.0	0.8814
AT3G52660			RNA-binding (RRM/RBD/RNP motif...		Lus10034195 [exp]	3.5	0.8804
AT5G66440			unknown protein		Lus10028329 [exp]	9.5	0.8417
AT4G37210			Tetratricopeptide repeat (TPR)...		Lus10019658 [exp]	13.6	0.8702
AT1G04230			Protein of unknown function (D...		Lus10039411 [exp]	14.2	0.8307
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Lus10027018 [exp]	14.8	0.8720
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10031062 [exp]	17.7	0.8610
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Lus10019235 [exp]	21.2	0.8562
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Lus10006348 [exp]	26.5	0.8201
AT5G48450		SKS3	SKU5 similar 3 (.1)		Lus10038239 [exp]	33.4	0.8170

Compare expression of checked genes

Lus10022011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.