Plant FIBer expression Database

Lus10022014 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G28500 91 / 1e-22 unknown protein
AT3G04550 86 / 4e-20 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012941
[exp]
105 / 2e-29 AT3G04550 135 / 9e-39 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G044900
[exp]
101 / 2e-25 AT3G04550 421 / 6e-145 unknown protein
PFAM info
Representative CDS sequence
>Lus10022014 pacid=23160275 polypeptide=Lus10022014 locus=Lus10022014.g ID=Lus10022014.BGIv1.0 annot-version=v1.0
ATGATTCTATCCGCTTCTGCAAACCTTGCAATTGTAAAACCCAACGGTAACATCTCCTTCAATGTCAAGAATTACCCCTTCTTCACTCACCACCACCCAC
GCTCTTCTTCGCTTCTCCCTCCACCTAAAACCTCCCAAAAACCCGTATCCCCATCCTTCATCCCTGCAAACCCGCCGCCGGTCATGCAGCCGTACCAGCC
CTTCCGGCCGCCGCAGTCCCCTCTCCCTCCGCAATACCGCTCCCTCGACCCGGCCGAGCGCCTCGAGGTCCTCGCCAACCGCAGCGGCCTCTGGTACGAG
TACGCCCCTCTCATCACTTTCCTCATCCGCGACGGCTTCTCCCCTTCCTCCATCGAGGAGTCCACAGGAATCTCCGGCGTCGAGCAGAACCGCCTCGTCG
TCGGCGCTCAAGTCCGCGAGTCCCTAATCGCTCCCCTTCCTCCATCGAGGAGTCCACAGGAATCTCTGGCGTCGAGCAGAACAGCCTCATCGTCGGAGCT
CAAGTCCGCGAATCCCTAA
AA sequence
>Lus10022014 pacid=23160275 polypeptide=Lus10022014 locus=Lus10022014.g ID=Lus10022014.BGIv1.0 annot-version=v1.0
MILSASANLAIVKPNGNISFNVKNYPFFTHHHPRSSSLLPPPKTSQKPVSPSFIPANPPPVMQPYQPFRPPQSPLPPQYRSLDPAERLEVLANRSGLWYE
YAPLITFLIRDGFSPSSIEESTGISGVEQNRLVVGAQVRESLIAPLPPSRSPQESLASSRTASSSELKSANP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G04550 unknown protein Lus10022014
[exp]
0 1
AT1G09900 Pentatricopeptide repeat (PPR-... Lus10015112
[exp]
5.8 0.8938
AT5G18570 EMB3138, ATOBGL... EMBRYO DEFECTIVE 3138, EMBRYO ... Lus10043418
[exp]
6.5 0.8767
AT5G35220 EGY1 ETHYLENE-DEPENDENT GRAVITROPIS... Lus10020304
[exp]
9.5 0.8802
AT3G53460 CP29 chloroplast RNA-binding protei... Lus10023191
[exp]
10.1 0.8936
AT4G34830 PDE346, MRL1 PIGMENT DEFECTIVE 346, MATURAT... Lus10012180
[exp]
11.5 0.8851
AT3G56650 Mog1/PsbP/DUF1795-like photosy... Lus10029785
[exp]
12.6 0.8889
AT1G09900 Pentatricopeptide repeat (PPR-... Lus10015108
[exp]
14.9 0.8784
AT5G44785 OSB3 organellar single-stranded DNA... Lus10002722
[exp]
19.6 0.8187
AT4G34830 PDE346, MRL1 PIGMENT DEFECTIVE 346, MATURAT... Lus10007565
[exp]
21.7 0.8717
AT1G09900 Pentatricopeptide repeat (PPR-... Lus10031564
[exp]
22.6 0.8670

Lus10022014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.