Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20410 252 / 6e-83 RNA-binding ASCH domain protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042558 [exp] 414 / 1e-147 AT2G20410 306 / 4e-104 RNA-binding ASCH domain protein (.1) Lus10006580 [exp] 307 / 6e-105 AT2G20410 327 / 2e-111 RNA-binding ASCH domain protein (.1) Lus10028672 [exp] 300 / 5e-101 AT2G20410 309 / 1e-103 RNA-binding ASCH domain protein (.1) Lus10014656 [exp] 281 / 1e-91 AT2G20410 295 / 1e-95 RNA-binding ASCH domain protein (.1) Lus10000855 [exp] 41 / 0.0002 AT2G20410 55 / 2e-09 RNA-binding ASCH domain protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G017900 [exp] 276 / 2e-92 AT2G20410 288 / 2e-96 RNA-binding ASCH domain protein (.1) Potri.013G045800 [exp] 267 / 2e-90 AT2G20410 281 / 3e-95 RNA-binding ASCH domain protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0178 [flax] [poplar] PUA PF04266 [flax] [poplar] ASCH ASCH domain
Representative CDS sequence Show only first row Show all	>Lus10022016 pacid=23160311 polypeptide=Lus10022016 locus=Lus10022016.g ID=Lus10022016.BGIv1.0 annot-version=v1.0 ATGCATCAGCCGTGGGCTTCTCTTCTCGTCCACGGGATCAAACGCATCGAAGGCCGCTCCTGGCCTGCTCCCCTTCGTGGCCGGTTGTGGATACATGCTG CCGGCAAAGTTCCAGAGCCAGAGACGATCAAATCCATGGAGGATTTCTACAGGGAAACTTATGCTCTAGATGGGATTAGTGACATCAAGTTTCCTCAACG TTACCCTGTTTCAAGGCTCTTAGGGTGTGTCGAAATAGTCGGGTGTCTAAAACGCGATGAGCTATCAAGTTGGGAGGCGATACCGGAAGGGGTGAGGGTA GAAGCACAAACTGACTTTTGCTGGCTTTGTGAACAGCCACAGCGGTTGTTGGTTCCATTCGAGATGAGAGGTAATCAAGATGTTTATAACTTGGAAAGGA AGATGTACGAGTCTGCAGTTCGAGGCCACGTCCCAGTTGAAGGTCCGATGCCTGTGAAATTTCCTCTTCCGAATCCAAGCAGTTCGTTCTCTTTGCGACC TGGTTCCATTGGTTGCTCTCGTGCCCCATCAGAAGTGGAGAAATCGTCAAGACTTATTGCAGCCATTGATTCTGCTCGTGCAGCAGCTACACAGTACACC AAGAAAGTCCAAAACCATGGCGCGTCAAATTTCACTGCAAATTCCAGCAACACGAAACCGTACGAATGGAGAACCAAATCACTGGTGAAGGCTCGGGATT CACAGGCTAACTTGCAGGGGAGTTGTAGTAACCAAGAGAGTCGACAGAACACATTGTCATTTTGTGGCCGCGGAAAACGTATCTGGCGGGATTGGTTGGG CATCTGA
AA sequence Show only first row Show all	>Lus10022016 pacid=23160311 polypeptide=Lus10022016 locus=Lus10022016.g ID=Lus10022016.BGIv1.0 annot-version=v1.0 MHQPWASLLVHGIKRIEGRSWPAPLRGRLWIHAAGKVPEPETIKSMEDFYRETYALDGISDIKFPQRYPVSRLLGCVEIVGCLKRDELSSWEAIPEGVRV EAQTDFCWLCEQPQRLLVPFEMRGNQDVYNLERKMYESAVRGHVPVEGPMPVKFPLPNPSSSFSLRPGSIGCSRAPSEVEKSSRLIAAIDSARAAATQYT KKVQNHGASNFTANSSNTKPYEWRTKSLVKARDSQANLQGSCSNQESRQNTLSFCGRGKRIWRDWLGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G20410			RNA-binding ASCH domain protei...		Lus10022016 [exp]	0	1
AT5G40380		CRK42	cysteine-rich RLK (RECEPTOR-li...		Lus10008764 [exp]	9.2	0.6593
AT5G62950			RNA polymerase II, Rpb4, core ...		Lus10005329 [exp]	11.0	0.6647
AT5G24090		ATCHIA	chitinase A (.1)		Lus10023535 [exp]	17.4	0.6919
					Lus10001007 [exp]	21.2	0.7008
AT5G16610			unknown protein		Lus10010975 [exp]	34.2	0.6567
AT1G49390			2-oxoglutarate (2OG) and Fe(II...		Lus10039975 [exp]	47.3	0.6082
AT1G51610			Cation efflux family protein (...		Lus10033367 [exp]	53.9	0.6238
AT1G31040			PLATZ transcription factor fam...		Lus10038365 [exp]	59.5	0.6475
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Lus10042983 [exp]	61.6	0.6129
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038454 [exp]	86.5	0.5869

Compare expression of checked genes

Lus10022016 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.