Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018837 [exp] 287 / 2e-96 ND / Lus10001876 [exp] 178 / 1e-52 AT1G01470 178 / 3e-54 LIGHT STRESS-REGULATED 3, LATE EMBRYOGENESIS ABUNDANT 14, Late embryogenesis abundant protein (.1) Lus10017807 [exp] 0 / 1 ND 33 / 2e-05
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022017 pacid=23160264 polypeptide=Lus10022017 locus=Lus10022017.g ID=Lus10022017.BGIv1.0 annot-version=v1.0 ATGGTTACTGATCAATTCAACCTAGGAGTTGCTGCTACTTATGGAGAAACACCCTCATCATCGTTGGTAATTGTGGGAAGTAGCTCGGTTGAGGATTGTA ACGATGTTCAGGATATTTATCATCATGTTGCTGCTGCCAATGATGATATGTACGTGACTGAGTTTTGCACAGATGCTCCTCAAAGTCTAGTAGAAGAATT CACATCCTTTCCAGCAGTATCTACTCCTATGCAAGCTGATGATCTCCAAGGCTCTCGATCAGCAGCTGAAACTCTCCAACATGTTATTTATCTTTTTTTG TTACTCGCTGAAGCTAGTGCTACTGCTGATTTGTACACTAATATTGATCAAGACGATGACTCACAAGGAGCTGCTGGTACTTGTGGTCAATCAACATCAT CGTTGGTATTTGAAGAAGATAATACTTGTGGTGTTCAGCTAATGCTAACTGCTGATTTGTACATGAATATTGATCAAGACGACTCAGGAAGTGCTGCTGG TACTTCAGGTCAATCAACATCGTCGTTGGTAGTTGAAGGAGATAATAGTAAGGGCCTACAGGTTATAAACAGCTCTCAAGTGATCCAGCTTTCTTTGACA CCAGCAGCAGCTGAAACTCAAACTCAGAGTTCTCCTAATCATCAGCATCATCTTGTGCTGAGTGAAAATACTGTTGCAATGACTGTTTCTACTACAGCTG ATGCTGATTTTTATATGGATGAATTGTTGTTCAATGGTCCTCAGACTTCATTGGTGTCTCCATTATTCTCATCTTATTCGTATCCTCCTATTTGGGATAT CGAAGCACCCATTGCCTCAGGGGATAGCTTACTCGAGTTGGATTCGTACACTGGATATCTCATGGATGATCTTTGGAGCTGA
AA sequence Show only first row Show all	>Lus10022017 pacid=23160264 polypeptide=Lus10022017 locus=Lus10022017.g ID=Lus10022017.BGIv1.0 annot-version=v1.0 MVTDQFNLGVAATYGETPSSSLVIVGSSSVEDCNDVQDIYHHVAAANDDMYVTEFCTDAPQSLVEEFTSFPAVSTPMQADDLQGSRSAAETLQHVIYLFL LLAEASATADLYTNIDQDDDSQGAAGTCGQSTSSLVFEEDNTCGVQLMLTADLYMNIDQDDSGSAAGTSGQSTSSLVVEGDNSKGLQVINSSQVIQLSLT PAAAETQTQSSPNHQHHLVLSENTVAMTVSTTADADFYMDELLFNGPQTSLVSPLFSSYSYPPIWDIEAPIASGDSLLELDSYTGYLMDDLWS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022017 [exp]	0	1
AT3G47160			RING/U-box superfamily protein...		Lus10001209 [exp]	1.0	0.9542
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Lus10022018 [exp]	2.0	0.9446
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10019117 [exp]	2.2	0.9400
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10009638 [exp]	2.8	0.9312
AT1G30140			unknown protein		Lus10024751 [exp]	3.2	0.9513
AT1G16670			Protein kinase superfamily pro...		Lus10042851 [exp]	3.5	0.9465
AT3G21260		GLTP3	GLYCOLIPID TRANSFER PROTEIN 3,...		Lus10029765 [exp]	3.7	0.9318
AT4G01710		ARPC5, CRK	CROOKED, ARP2/3 complex 16 kDa...		Lus10042895 [exp]	4.7	0.9290
AT5G37290			ARM repeat superfamily protein...		Lus10008435 [exp]	6.3	0.9290
AT1G15200			protein-protein interaction re...		Lus10023800 [exp]	6.5	0.9387

Compare expression of checked genes

Lus10022017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.