Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39840 564 / 0 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G59160 549 / 0 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT2G29400 545 / 0 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT3G46820 538 / 0 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT1G64040 535 / 0 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 522 / 0 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G43380 519 / 0 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT5G27840 491 / 4e-175 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT3G05580 485 / 9e-173 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT2G42500 295 / 5e-98 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042559 [exp] 692 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004692 [exp] 567 / 0 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10030163 [exp] 565 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10040259 [exp] 562 / 0 AT2G39840 590 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 561 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10016489 [exp] 561 / 0 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004989 [exp] 547 / 0 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10021872 [exp] 539 / 0 AT2G39840 523 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10011827 [exp] 522 / 0 AT2G39840 513 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G045900 [exp] 614 / 0 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 601 / 0 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 575 / 0 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G060800 [exp] 560 / 0 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.010G197600 [exp] 557 / 0 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.009G037700 [exp] 541 / 0 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.001G245700 [exp] 540 / 0 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.001G098600 [exp] 534 / 0 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.016G142700 [exp] 499 / 3e-178 AT2G39840 493 / 1e-177 type one serine/threonine protein phosphatase 4 (.1) Potri.006G113100 [exp] 491 / 7e-175 AT2G39840 488 / 4e-175 type one serine/threonine protein phosphatase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10022019 pacid=23160203 polypeptide=Lus10022019 locus=Lus10022019.g ID=Lus10022019.BGIv1.0 annot-version=v1.0 ATGGATCCGACTATTCTAGATGATATTATACGGCGTCTCCTTGAGGTTCGTGGTAAACCAGGAAAGCAGGTGCAACTATCTGAGTCTGAAATCCGGCAAC TTTGTTCTACCTCCCGAGAGATCTTCCTGCAGCAACCGAATTTGCTAGAGCTTGAAGCACCCATAAAGATTTGCGGTGATATCCATGGCCAATATTCTGA TCTGTTAAGGCTTTTTGAATATGGTGGATTGCCTCCACGTTCAAACTATTTGTTTTTAGGGGATTATGTGGATCGAGGCAAGCAAAGTCTAGAGACAATA TGCCTGCTTCTTGCGTATAAGATAAAGTACCCAGAGAACTTCTTTCTCTTGAGGGGAAACCATGAATGTGCTTCTATTAACCGTATATATGGTTTTTTCG ATGAGTGCAAAAGGAGGTTTAATGTTAGACTCTGGAAGACATTCACAGATTGTTTCAACTGTCTACCTGTGGCTGCTCTAATTGATGAGAAAATCCTCTG TATGCATGGTGGTCTTTCCCCGGATTTGCAACACTTAGATGAAATAAGAAATTTAGCCCGACCAACTGATGTACCGGATGCAGGATTGCTCTGTGATCTG TTGTGGTCAGATCCTAGCAAAGATGTTCAAGGTTGGGGAATGAATGATAGGGGTGTTTCATTTACTTTTGGTCATGATAAGGTGACAGAGTTCCTTCAGA AGCATGATCTGGATCTCATCTGTCGTGCTCACCAGGTTGTCGAGGATGGATATGAGTTTTTTGCAGACAGACAGCTTGTAACCATATTTTCGGCACCTAA TTACTGCGGAGAGTTTGACAATGCTGGTGCTATGATGAGTGTTGATGAGACATTGATGTGCTCATTTCAAATACTAAAGCCCGCTGACAAGAAGTCGAAG TTCAACTTTGGGCATGCAACTCCCGCCAAGCCTGGGAACGCTTCAGGGGTGTTTGGGAGCACAACCACAGCTAAGCCCGGCAACACTCCATCTGGCATCA AGACTGCTTGTGGTGTTTCCACTGGGCTTTATGTCAATTTATCGCTATTCCTTCTTGGTTTTCGCTTCATCACTTACTCAATGCTGCTGCCTTTGTTGCT CGATTGCTGCAGTCTTTCCTGGGCACGAATTTATGACGCTAAACCATCAGAGCCTGCTTTGTTCCATGAAGAACGATTAGATGAGTTTGGACTAGGGGAG AAGAGAAGAGATGATGGAAGTGGAAAAGGAGTAGGGTGA
AA sequence Show only first row Show all	>Lus10022019 pacid=23160203 polypeptide=Lus10022019 locus=Lus10022019.g ID=Lus10022019.BGIv1.0 annot-version=v1.0 MDPTILDDIIRRLLEVRGKPGKQVQLSESEIRQLCSTSREIFLQQPNLLELEAPIKICGDIHGQYSDLLRLFEYGGLPPRSNYLFLGDYVDRGKQSLETI CLLLAYKIKYPENFFLLRGNHECASINRIYGFFDECKRRFNVRLWKTFTDCFNCLPVAALIDEKILCMHGGLSPDLQHLDEIRNLARPTDVPDAGLLCDL LWSDPSKDVQGWGMNDRGVSFTFGHDKVTEFLQKHDLDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDETLMCSFQILKPADKKSK FNFGHATPAKPGNASGVFGSTTTAKPGNTPSGIKTACGVSTGLYVNLSLFLLGFRFITYSMLLPLLLDCCSLSWARIYDAKPSEPALFHEERLDEFGLGE KRRDDGSGKGVG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10022019 [exp]	0	1
AT3G19130		ATRBP47B	RNA-binding protein 47B (.1)		Lus10019889 [exp]	1.0	0.9655
AT2G39840		TOPP4	type one serine/threonine prot...		Lus10042559 [exp]	2.0	0.9517
AT1G32440		PKP3	plastidial pyruvate kinase 3 (...		Lus10011057 [exp]	2.4	0.9541
AT5G22250		AtCAF1b	CCR4- associated factor 1b, Po...		Lus10029417 [exp]	3.5	0.9487
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10017066 [exp]	3.9	0.9518
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Lus10027540 [exp]	4.7	0.9315
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10015106 [exp]	5.5	0.9512
AT3G58470			nucleic acid binding;methyltra...		Lus10000248 [exp]	6.3	0.9350
AT1G67420			Zn-dependent exopeptidases sup...		Lus10015792 [exp]	6.5	0.9451
AT5G05610	Alfin	AL1	alfin-like 1 (.1.2)		Lus10040207 [exp]	9.2	0.9313

Compare expression of checked genes

Lus10022019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.