Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20630 254 / 2e-86 ATGER3, GLP3A, GLP3B, GLP3 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) AT1G72610 243 / 6e-82 ATGER1, GLP1 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) AT1G09560 143 / 2e-42 GLP5 germin-like protein 5 (.1) AT3G04200 142 / 4e-42 RmlC-like cupins superfamily protein (.1) AT1G02335 139 / 7e-41 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT5G39110 137 / 3e-40 RmlC-like cupins superfamily protein (.1) AT5G26700 136 / 7e-40 RmlC-like cupins superfamily protein (.1) AT5G39160 135 / 2e-39 RmlC-like cupins superfamily protein (.1.2.3) AT5G38960 134 / 4e-39 RmlC-like cupins superfamily protein (.1) AT5G39130 134 / 4e-39 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010769 [exp] 367 / 1e-130 AT5G20630 283 / 7e-98 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10002795 [exp] 230 / 6e-77 AT1G72610 261 / 3e-89 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Lus10037663 [exp] 196 / 3e-63 AT5G20630 209 / 2e-68 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037664 [exp] 193 / 5e-62 AT5G20630 198 / 3e-64 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015644 [exp] 186 / 2e-59 AT5G20630 192 / 6e-62 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10020026 [exp] 185 / 5e-59 AT5G20630 190 / 3e-61 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10036296 [exp] 184 / 2e-58 AT5G20630 213 / 3e-70 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10015643 [exp] 183 / 2e-58 AT5G20630 182 / 4e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Lus10037661 [exp] 180 / 6e-57 AT5G20630 182 / 6e-58 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G142600 [exp] 264 / 3e-90 AT5G20630 270 / 6e-93 GERMIN-LIKE PROTEIN 3, ARABIDOPSIS THALIANA GERMIN 3, germin 3 (.1) Potri.003G065266 [exp] 251 / 2e-85 AT1G72610 240 / 6e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.001G169000 [exp] 250 / 7e-85 AT1G72610 241 / 2e-81 A. THALIANA GERMIN-LIKE PROTEIN 1, germin-like protein 1 (.1) Potri.011G162200 [exp] 147 / 3e-44 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G163800 [exp] 144 / 5e-43 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.001G464100 [exp] 143 / 9e-43 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 143 / 1e-42 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G163216 [exp] 142 / 3e-42 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 142 / 3e-42 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.004G179855 [exp] 141 / 6e-42 AT5G39130 274 / 6e-94 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10022020 pacid=23160237 polypeptide=Lus10022020 locus=Lus10022020.g ID=Lus10022020.BGIv1.0 annot-version=v1.0 ATGAAGTACAGCAACCTCCCAATCCCACTCCTCATCCTTTTCTACTTCCTCATTATCTCTTGTTATTCATCCAGAGTAGCAGCCTTAGTGCAAGACTTCT GCGTGGGAGACTTGAAGTCAGCAGACACTCCTTCGGGATACCCATGCAAACCAGCCACCTCCGTTACCGAAAACGACTTTGTATACTCGGGGCTAGCATT CCCAGGGAACACAACCAACATCATCAAAGCAGCAGTGACCCCTGGCTTTGTCTCCCAGTTCCCTGGGGTCAACGGCCTTGGACTCTCCATAGCAAGGCTT GACCTTGCTGTCGATGGAGTCATCCCACTCCACACCCACCCTGCTGCTTCTGAGGTTCTTCTCGTGCTGCAAGGCACCATCTGTGCGGGCTTCATATCAT CCGGTGCTAACAAGGTATACTTCAAGTCCCTTCAGAAGGGCGATGCTATGGTGTTCCCTCAAGGACTCCTCCATTTCCAGTTCAACTCTGGCAAGACACC AGCTGCTGCCTTCGTCACCTTGAGCAGCCCTAACCCTGGCCTCCAGATTACCGACTTTGCTCTCTTTGCTAACGACTTGCCCTCTGAGATTGTCGAGAAA GTTACTTTCTTGGATGATGCCCAGGTCAAGAAGCTTAAGGGTGTTCTTGGCGGCACCGGCTAA
AA sequence Show only first row Show all	>Lus10022020 pacid=23160237 polypeptide=Lus10022020 locus=Lus10022020.g ID=Lus10022020.BGIv1.0 annot-version=v1.0 MKYSNLPIPLLILFYFLIISCYSSRVAALVQDFCVGDLKSADTPSGYPCKPATSVTENDFVYSGLAFPGNTTNIIKAAVTPGFVSQFPGVNGLGLSIARL DLAVDGVIPLHTHPAASEVLLVLQGTICAGFISSGANKVYFKSLQKGDAMVFPQGLLHFQFNSGKTPAAAFVTLSSPNPGLQITDFALFANDLPSEIVEK VTFLDDAQVKKLKGVLGGTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10022020 [exp]	0	1
AT2G37240			Thioredoxin superfamily protei...		Lus10030907 [exp]	1.4	0.9648
AT1G26230		Cpn60beta4	chaperonin-60beta4, TCP-1/cpn6...		Lus10030917 [exp]	1.4	0.9547
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10010769 [exp]	1.7	0.9500
AT3G24140	bHLH	bHLH097, FMA	FAMA, basic helix-loop-helix (...		Lus10007139 [exp]	3.7	0.9185
AT5G13930		ATCHS, TT4, CHS	TRANSPARENT TESTA 4, CHALCONE ...		Lus10033717 [exp]	3.9	0.9305
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	4.0	0.9411
AT3G23530			Cyclopropane-fatty-acyl-phosph...		Lus10023741 [exp]	8.5	0.8979
AT1G69200		FLN2	fructokinase-like 2 (.1)		Lus10037064 [exp]	11.4	0.8775
AT3G29590		AT5MAT	HXXXD-type acyl-transferase fa...		Lus10041655 [exp]	11.7	0.8989
AT3G03630		CS26	cysteine synthase 26 (.1)		Lus10020342 [exp]	12.5	0.9265

Compare expression of checked genes

Lus10022020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.