Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08640 311 / 2e-106 CJD1 Chloroplast J-like domain 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042564 [exp] 521 / 0 AT1G08640 308 / 5e-104 Chloroplast J-like domain 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G046200 [exp] 364 / 3e-127 AT1G08640 358 / 5e-125 Chloroplast J-like domain 1 (.1) Potri.019G018300 [exp] 353 / 9e-123 AT1G08640 342 / 2e-118 Chloroplast J-like domain 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11833 [flax] [poplar] CPP1-like Protein CHAPERONE-LIKE PROTEIN OF POR1-like
Representative CDS sequence Show only first row Show all	>Lus10022022 pacid=23160256 polypeptide=Lus10022022 locus=Lus10022022.g ID=Lus10022022.BGIv1.0 annot-version=v1.0 ATGGCTTTCGCAATATCGAATGCATTTACCTGCCCAAAACCCCGAATTCCACCAAGCAATTGGAACCTCAGAACTCCATCCCCCAGATTGCAGCCTTCCT TCGTCAGGTTCTCTTCTAGAGTTCCGTTGAATGGAAAATTTGTATGCTTGGCTGCTTCTGCTGCAGGGAGTTCTAGCCCAGACAATGATTTGAACCCGTA CGAGGTCCTTGGTGTGAATCCATTCTCTGGTTTTGAGGCGGTCAAGAAAGCGCATAAGAAGAAGCGCCAGGAAGCCGAGAGTCTGGGTGATGAAACCACT GTTGTTCAGCTTGACAAGGCATATGATAAGCTGATGATGGCGCAACTGAAAAATCGAAAGGAAGGTGTGGCATATGGTTCATTCAAGGTCTCAAAGGACG TAAAATATGCTGACAAGATGCCGATCCTACCGTGGGGACCAAGGTTTACCAAGTCCAGCCAAAATGATATGCGAATCAACTTGGCTATATCTGTCGTATT TGTAACTATTAGTCCGCTCTCCTGTTCTCACACTGTCCTCCTTCTACAGACAGCTTGGATTGCAATCAAACGCAGTGCTGAATACAAACCGCTGCAGTTT TTGGCATTTGCATTTGTATACCGCCTTTTTGAGAAGTTGAAGGCAACTGAACCGGCTGGATCACCAACACTTACAGAAGACGGTGAGGATGAGGGCAGAG GACTACGAATGGGAAAGCGGCTTCTTCGATCGCTAGCCCTATCTTTCGGCTGCATTGCCTTTGCTTCTCTGGCCTACACTTGCATTCTGAATGTGATAGA ATACACTGGGGGTTTCATACCTATGTTGCTATACAACAATCAGGAGTTGATAATCACTGCTTCATCAGCAATTTGTTTATACATTTTGGCGTCGTACTAC CGATGA
AA sequence Show only first row Show all	>Lus10022022 pacid=23160256 polypeptide=Lus10022022 locus=Lus10022022.g ID=Lus10022022.BGIv1.0 annot-version=v1.0 MAFAISNAFTCPKPRIPPSNWNLRTPSPRLQPSFVRFSSRVPLNGKFVCLAASAAGSSSPDNDLNPYEVLGVNPFSGFEAVKKAHKKKRQEAESLGDETT VVQLDKAYDKLMMAQLKNRKEGVAYGSFKVSKDVKYADKMPILPWGPRFTKSSQNDMRINLAISVVFVTISPLSCSHTVLLLQTAWIAIKRSAEYKPLQF LAFAFVYRLFEKLKATEPAGSPTLTEDGEDEGRGLRMGKRLLRSLALSFGCIAFASLAYTCILNVIEYTGGFIPMLLYNNQELIITASSAICLYILASYY R

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10022022 [exp]	0	1
AT1G10510		EMB2004	embryo defective 2004, RNI-lik...		Lus10030829 [exp]	2.0	0.8531
AT4G21090		ATMFDX2	ARABIDOPSIS MITOCHONDRIAL FER...		Lus10014947 [exp]	4.0	0.8587
AT1G08640		CJD1	Chloroplast J-like domain 1 (....		Lus10042564 [exp]	4.2	0.8456
AT1G49510		EMB1273	embryo defective 1273 (.1)		Lus10027929 [exp]	5.3	0.8469
AT3G57490			Ribosomal protein S5 family pr...		Lus10030129 [exp]	9.2	0.8220
AT5G11880			Pyridoxal-dependent decarboxyl...		Lus10023548 [exp]	13.1	0.8568
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10028965 [exp]	13.3	0.8708
AT3G13470		Cpn60beta2	chaperonin-60beta2, TCP-1/cpn6...		Lus10010321 [exp]	14.1	0.8463
AT4G18100			Ribosomal protein L32e (.1)		Lus10007541 [exp]	17.5	0.8200
AT1G09795		HISN1B, ATATP-P...	ATP phosphoribosyl transferase...		Lus10003685 [exp]	19.7	0.8227

Compare expression of checked genes

Lus10022022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.