Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07090 210 / 1e-69 LSH6 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) AT5G28490 206 / 2e-68 OBO2, LSH1 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) AT3G04510 204 / 2e-67 LSH2 LIGHT SENSITIVE HYPOCOTYLS 2, Protein of unknown function (DUF640) (.1) AT5G58500 200 / 4e-66 LSH5 LIGHT SENSITIVE HYPOCOTYLS 5, Protein of unknown function (DUF640) (.1) AT3G23290 200 / 6e-66 LSH4 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) AT2G31160 197 / 1e-64 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) AT2G42610 188 / 2e-61 LSH10 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) AT1G78815 186 / 4e-60 LSH7 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) AT4G18610 179 / 9e-58 LSH9 LIGHT SENSITIVE HYPOCOTYLS 9, Protein of unknown function (DUF640) (.1) AT1G16910 169 / 4e-54 LSH8 LIGHT SENSITIVE HYPOCOTYLS 8, Protein of unknown function (DUF640) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042565 [exp] 263 / 2e-90 AT5G28490 233 / 1e-78 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Lus10029219 [exp] 203 / 6e-67 AT2G42610 238 / 6e-81 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10007272 [exp] 202 / 2e-66 AT2G42610 241 / 4e-82 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10024901 [exp] 194 / 4e-63 AT2G31160 249 / 3e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10029838 [exp] 193 / 4e-63 AT2G42610 261 / 3e-90 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10022918 [exp] 194 / 5e-63 AT2G31160 249 / 4e-84 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Lus10020700 [exp] 192 / 2e-62 AT2G42610 258 / 1e-88 LIGHT SENSITIVE HYPOCOTYLS 10, Protein of unknown function (DUF640) (.1), Protein of unknown function (DUF640) (.2) Lus10023383 [exp] 191 / 3e-62 AT1G07090 246 / 2e-83 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Lus10038424 [exp] 189 / 4e-61 AT1G07090 247 / 9e-84 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157600 [exp] 226 / 3e-76 AT5G28490 228 / 7e-77 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.009G076100 [exp] 218 / 1e-72 AT1G07090 259 / 2e-88 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.013G046500 [exp] 216 / 7e-72 AT5G28490 216 / 4e-72 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.019G018600 [exp] 213 / 4e-71 AT5G28490 202 / 1e-66 ORGAN BOUNDARY 2, LIGHT-DEPENDENT SHORT HYPOCOTYLS 1, Protein of unknown function (DUF640) (.1) Potri.001G281000 [exp] 209 / 4e-69 AT1G07090 251 / 4e-85 LIGHT SENSITIVE HYPOCOTYLS 6, Protein of unknown function (DUF640) (.1) Potri.010G070700 [exp] 204 / 5e-67 AT2G31160 226 / 3e-75 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Potri.008G167700 [exp] 202 / 1e-66 AT3G23290 213 / 9e-71 LIGHT SENSITIVE HYPOCOTYLS 4, Protein of unknown function (DUF640) (.2) Potri.001G390900 [exp] 198 / 2e-65 AT1G78815 242 / 2e-82 LIGHT SENSITIVE HYPOCOTYLS 7, Protein of unknown function (DUF640) (.1) Potri.005G225600 [exp] 198 / 4e-65 AT2G31160 232 / 6e-78 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1) Potri.002G037500 [exp] 197 / 1e-64 AT2G31160 230 / 3e-77 ORGAN BOUNDARY 1, LIGHT SENSITIVE HYPOCOTYLS 3, Protein of unknown function (DUF640) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04852 [flax] [poplar] DUF640 Protein of unknown function (DUF640)
Representative CDS sequence Show only first row Show all	>Lus10022023 pacid=23160276 polypeptide=Lus10022023 locus=Lus10022023.g ID=Lus10022023.BGIv1.0 annot-version=v1.0 ATGACAACTCCTCCTCCTCCTCAACCTCCTCCCCAACCTAGCCCTCCTCCTCTTCGTACAAACTCCTCCTCCTCATCTTCTTCGCGATACGAGAACCAGA AGAGGAGGGACTGGAACACCTTCTGCCAGTACCTCCGGAACCACCGTCCTGTCCCTCTCAGCCTTCCGACCTGCGGTGGCCCCCACGTCCTCGAGTTCTT AAGCTACCTGGACCAGTTCGGCAAGACCAAAGTCCACACCCAGTCTTGCCCCTTCTTCGGCATCCCCAACCCTCCTGCCCCGTGCTCCTGCCCTCTTCGA CAGGCATGGGGCAGCCTCGACGCTCTCATCGGGCGTCTCAGGGCTGCCTACGAGGAGCACGGAGGCCGCCCTGAGTTCAACCCGTTTGGAGCCAGGGCGG TCAGGATCTACCTCAGGGAGGTCAGGGACTTCCAGGCCAAATCCAGAGGAGTAAGCTACGAGAAGAAGAAGAGGAAAAGGCCCACCACACCCAAGGCTAA TAATTTCATTTCAGGTGGTGGTGGATCAAGCTCGTCGGCGGGGATCAACTAG
AA sequence Show only first row Show all	>Lus10022023 pacid=23160276 polypeptide=Lus10022023 locus=Lus10022023.g ID=Lus10022023.BGIv1.0 annot-version=v1.0 MTTPPPPQPPPQPSPPPLRTNSSSSSSSRYENQKRRDWNTFCQYLRNHRPVPLSLPTCGGPHVLEFLSYLDQFGKTKVHTQSCPFFGIPNPPAPCSCPLR QAWGSLDALIGRLRAAYEEHGGRPEFNPFGARAVRIYLREVRDFQAKSRGVSYEKKKRKRPTTPKANNFISGGGGSSSSAGIN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G07090		LSH6	LIGHT SENSITIVE HYPOCOTYLS 6, ...		Lus10022023 [exp]	0	1
AT5G28490		OBO2, LSH1	ORGAN BOUNDARY 2, LIGHT-DEPEND...		Lus10042565 [exp]	1.0	0.9419
AT1G47200		WPP2	WPP domain protein 2 (.1)		Lus10009747 [exp]	1.4	0.9176
AT2G48010		RKF3	receptor-like kinase in in flo...		Lus10042679 [exp]	1.7	0.9097
AT5G03680	Trihelix	PTL	PETAL LOSS, Duplicated homeodo...		Lus10035570 [exp]	3.2	0.8599
AT4G38220		AQI	aquaporin interactor, Peptidas...		Lus10013848 [exp]	5.3	0.8618
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Lus10030679 [exp]	8.5	0.8452
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Lus10024901 [exp]	9.5	0.8450
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10020216 [exp]	9.8	0.8368
AT4G34340		TAF8	TBP-associated factor 8 (.1)		Lus10026530 [exp]	13.0	0.8367
AT3G13677			unknown protein		Lus10015813 [exp]	13.1	0.7981

Compare expression of checked genes

Lus10022023 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.