Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04490 1262 / 0 unknown protein AT1G08620 1256 / 0 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT1G30810 632 / 0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT4G20400 630 / 0 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT2G34880 600 / 0 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT2G38950 463 / 1e-142 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G63490 301 / 5e-84 transcription factor jumonji (jmjC) domain-containing protein (.1) AT5G46910 212 / 2e-56 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT3G48430 160 / 5e-39 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) AT5G04240 159 / 2e-38 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042566 [exp] 4143 / 0 AT3G04490 1382 / 0.0 unknown protein Lus10008063 [exp] 649 / 0 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10033903 [exp] 587 / 0 AT1G08620 572 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10003548 [exp] 466 / 2e-140 AT1G08620 455 / 4e-142 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Lus10008495 [exp] 337 / 9e-93 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10008531 [exp] 234 / 2e-61 AT1G63490 796 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10035385 [exp] 223 / 8e-60 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10030988 [exp] 222 / 2e-59 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10037989 [exp] 158 / 3e-38 AT5G04240 988 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019100 [exp] 1505 / 0 AT3G04490 1450 / 0.0 unknown protein Potri.019G018700 [exp] 1337 / 0 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.013G046700 [exp] 1081 / 0 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.002G037300 [exp] 701 / 0 AT1G08620 669 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.001G440900 [exp] 655 / 0 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2) Potri.011G155100 [exp] 644 / 0 AT4G20400 707 / 0.0 JUMONJI 14 (.1.2) Potri.003G126600 [exp] 333 / 7e-92 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.003G096100 [exp] 219 / 3e-58 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.001G137700 [exp] 215 / 7e-57 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.012G092400 [exp] 179 / 1e-44 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase CL0029 [flax] [poplar] PF02928 [flax] [poplar] zf-C5HC2 C5HC2 zinc finger CL0029 [flax] [poplar] Cupin PF02375 [flax] [poplar] JmjN jmjN domain CL0029 [flax] [poplar] PF05964 [flax] [poplar] FYRN F/Y-rich N-terminus CL0029 [flax] [poplar] PF05965 [flax] [poplar] FYRC F/Y rich C-terminus
Representative CDS sequence Show only first row Show all	>Lus10022024 pacid=23160272 polypeptide=Lus10022024 locus=Lus10022024.g ID=Lus10022024.BGIv1.0 annot-version=v1.0 ATGCAACAGCAGCAGCTGGGAGGAGGTGCTCCTGATTTGGCGCACCTTCAGTCGACGATGCACGCCATCGAGCTTGCTTGCTCTTCCATTCAGATGCACA CGAATTCCGCTGCAGCAGAGGCAACGATTTTGTCACTAAACCAGTCCACACGACCTTACAAGCTATGCCAATTTATTCTTGAGAATTCTCAAGTTGCAAG TGCAAGGTTCCAAGCTGCCGCGGCAATACGCGATGCAGCTGTTAGGGAATGGAGTTCCCTGTCGGGTGATGACAAAAAGGGATTGATAGGGATTGAACTT ACTGTTGCTGAGAAGGAGACGTTTTTTTATCAGGTGAACCAGGCTATTATTGGAATTCACGGAACAGATGTCCAGTTCACTGGAATAAATTTTCTTGAAT CACTGGTGTCAGAGTTCTCTCCTTCCACTTCAAGTGCCATGGGCCTACCTAGGGAATTTCATGAGCAATGCCGCAAGTCTCTAGAGCTTCAGTATCTGAA GGTTGCTGCTGCAACATTTTACTGTTGGGCGAAGGATGCTGCTGTAAGTGTTGCAACAAGAATAACTGAATCCAATACTGAAGTCCCTGAGGTAAAGGTA TGCACGACTGGATTGCGTCTCATGCTTCAAATCCTTAATTGGGAGTTCCAGCCATCTGCCAAAGCCACAGCTGGAATAAATGTTTACTCACCTGGAATTA GGATAGATGCAACTGCAACAAAAAGGTCTGACTGTCATGTGGCACAGCTTGGCCCTGCATGGCGAGATGCCTTGATAACCAGTGGTCACATTGGATGGAT AATAAGCTTATATGTAGCACTGAGAGAAAAGTTTTCAGGTGGGACTTACTGGCTTGATTGTCCGATTGCTGTTTCTGCTCGGAAGCTAATTGTTCAATTT TGCTCTGTGACGGGTTCTATATTTCTGTCTGGTAATGACCACATGCAAGAAAACCATTTGGTGCAGTTATTGTCTGGGATTATGCACTGGATTGATCCCC CCGATAGAATTGCTCAAACAATTGAATCTGGACGAAGTGAAAGTGAGATGCTTGATGGCTGCCGTGCTTTATTGTCCATGGCAACGGTGGCAAACCCTTT CCTATTTGACAACCTATTAAAGTCTATAAGACCCTTTGGCACCCTCACCCTGTTATCTAACTTGATGAGTGAAGTCATCAAAGTTCAAATGACTAAGAGA TCTGATGAGGAGACATGGAGCTGGGAGGCACGTGACATACTGTTGGATACCTGGACAACCCTACTCATGCCCGTGGAGTCTTCAGGTGGGAATGCTACAA TTCCACAGGATGGGATCAACGCTGCTGCAAACGTATTTGCCTTTATTGCAGAATCTGAACTGAAAGCCGCTTCTGCATCAGCATTGGACGAGGATGATGG CAACGACTACCTTCAGGCTTCTGTTTCTTCAATGGATGAAAGGCTGATTTCATATGCCCTTATTGGAAGAGCAGCAGTCAATGTTACAATTCCCCTGCTC TCCAGATTGTTTTCCGAGCGAGTTGCACTGCTTCATCAGGGCAGGGGAATTATGGATCCAACACCAACTTTGGAAGAACTGTACTCGTTGCTATTGGTTA TCGGGCATGTACTTGCAGATGAAGCAGAAGGAGAGACCCCCGTGATTCCAAATAGCATTCAGTCTCATTTTGGTGACACTTTGGACACAGAAAATCATCC TGTGGTTATCCTCTCTGTTTCGATAATAAAGTTTGCTGAGCAGAGTTTAAATCCGGAAATGAGAGCTGCTGTTTTCAGTCCTCGGCTTATGGAGGCTGTT ATATGGTTTCTTGCAAGATGGTCCTGTACATACCTACTATCAGAAGAAATTGGAGAGAGTGATTTGCATTTGCTTCAGAACTCCAGAAAAACTCTGCTTA GTTTTTTTGGGGAATATAATCAGGGAAAGATTGTTCTTGATATTATTGTCCGTGTTTCTGTGACTACACTCACGTCATACCCTGGAGAAAAGGATTTGCA GGCGCTCACTTGCTCTCAATTATTGCGGGCTCTTGTCCGACGCAGGCGTATTTGTACCAGCCTTATTCTACTGGACTCGTGGCGTGAACTTGCAAGTACT TTTGCAAATGAAGAAGCATTGTTTTTGTTAAATGCTGCTAATCAGCGTTCCTTGGCTGAAACTCTTGTTCGTTCAGCTTCTGGAATTAAAAAGTCAGAGT CAGCGTATCAATATGTCCGGGATCTAATGGGTCCTGTGACAAAGCATCTGATAGAATTGTCTAGCAAGAGCGACCTCAACAACATCTCTGAGCAGCCAGA TATCATATTCTCTCTAAGTTGCTTATTAGAGCGGCTACGTGGAGCTGCAAGAGCATCAGAACCTCGAACACAAAGAGCACTGTGTGAGATGGGATTTTCC TTGTTGAAACCTGTTCTAATTTTTATTGAAGTGTATAAGAATGAGTCCACAGTCATCTATCTGCTACTCAAGTTTGTTGTTGATTGGGTTGATGGACAAA TAGCCTACTTGGAAGCTAGGGAGACGTCTGCCGTTGCTGACTTCTCTACACGGTTGCTTCAGCTTTACTCCTCTCACAATATTGGCAAGATATCTATAAG TCTTTCTAGTAGCTTACTGAGTGAAGCAAATACTGAGAAGTACAAGGATTTACGTGCTCTGCTTCAGCTTCTTTCAAGTTTCTGCTCAAAAGATCTGGTT GATTTCTCCTCAGATTCCGACGAATCACAGAGCACGAACATATCCGAGGTGGTTTACTTAGGTCTTCACATAGTTACTCCACTGATATCGTTGGAGTTAC TGAAGTACCCCAAACTTTGCCATGATTACTTCTCACTGCTGTCACATATGCTGGAGGTTTATCCAGAAACAGTAGTACGACTTAATAGTGAAGCCTTTCT ACATGTGCTTGGAACACTCGACTTTGGACTTTATCACCAGGATACAGAAATCGTGAACATGTGTCTGAGATCTTTGAAAGCCCTTGCTGCCTACCACTAC AAGGCAACTGCTAGCGGCAGCCTAGGCTTGGGCTCCCACGCCACATCGGTGAAAGATCTACATGGCAATATGCAGGAGGGCATTTTCAGTAGATTCCTCC AAGTGTTGCTTCAACTACTTCTTTTTGAGGATTACAGCCCGGATCTGGTTAGCCCGGCTGCTGATGCATTGTTCCCGTTGATCCTCTGTGAACAAAGCCT GTACCAGAAACTAGGGAGTGAGTTGATAGAGAGACAGGCAAATCCAGAGTTCAAATCTAGGCTTGCGAATGCATTCCATATGGTGACAAACTCCAACCAG CTCTCTTCCAATCTCGACCGTATGAACTACCAAAGATTCCGTAAAAATGTCAATGCCTTCCTCGTCGAGGTGATGGGAACCGACTTCATGAGAGTATGTG TTAAGGAGGAGAGTGAAGAAGTCCCTGCAGTTCCTCCCGGGTTTGAGTCGTTTGCCGCATTTTCCCTCAAGAGGGTGGAAGATGGTGGAAACAAAGGAAA TCCTGTTGTAATTAGTGGTTCAGCTGTTGAAAGAGCTTCTGCGTCTCAGTTAATGCAGATAAAATCAGAGCCTTGCATTATTGATACACAACAGGAGCAA ATTAGTCAAAATGCAACAAGTTCTTCAGCTTCTGCAAGTGTTGGTGCATTTCCACCTGATCAAGCGAAAGCCGAACCTCAAAATAGCGATGCCACTAAAA TCGCAGCAAAGTCTCTCCGGCGTAAGCCTTGGATAAATCATGGGCATCTAGAACACTGTTCTGAAGATGATCCCAAAACCGCTGGCGTTAACCAGAATGC CAATTTAAGGACTTCTCTTCCTAAGGGTGTCATTCGTGGCTGTCCAAGGTGTAAAGATTGCCAAAAGGTCACAGCTAGATGGCGTCCTGAATATGCTCGC AGACCTGATATTGAGGAAGCTCCTGTCTTCTACCCGACAGAAGAAGAGTTTGAAGATACCCTGAATTATATAGCTAGTATTCGTCCAAAAGCTGAGCCTT ATGGCATCTGTCGCATTGTCCCTCCTCCTTCGTGGAAGCCTCCCTGTCCCCTTAAGGAAAAGAGTATATGGGAGGGCTCCAAATTTTCTACTCGTGTTCA GAGAGTTGACAAACTGCAAAACCGCGACTCAATGATAAAGTTGTCCAAATTGAATAATCATACTCGGAAGAAAAGGAGAAAATGTGGGAGAATGGCAGTA GATTGTGGGAATGATGTTGGAAACAAACCAGAGCTTGGTGATGCCGCCGGGGTTGGTTTGCCTGAGACATTTGGGTTTGATCCTGGTCCAGAATTTGATC TGAGTACATTTCAGAAGTATGCCGATGATTTCAAGGCCCAGTTCTTTAGGAAGGATGAAGATGCTGAGAACAAATCTTCACTTCTGAACTGCGAACCCAC TGTGGAGAACATAGAGGGTGAATATTGGAGGATTGTAGAGAAGGCCACTGAAGAAATTGAGGTTCTGTATGGAGCTGATCTTGAAACTGGAGTGTTTGGC AGTGGATTTCCGAAAATGTGTGGTGAAGATGGTCTTGTTACTGTGGACCGATACACTAAATCAGGCTGGAACTTGAATAACTTCCCAAGGCTTTCTGGAT CTGTCCTGTCTTATGAAAGTGGTGATATTTCTGGTGTGCTAGTCCCCTGGCTGTACATTGGGATGTGCTTTTCGTCCTTCTGCTGGCATGTTGAAGATCA TCACTTGTATTCACTTAATTACATGCATTGGGGTGCTCCAAAATTGTGGTATGGGGTTCCAGGCAAGGATGCTCTTATGCTGGAAGAAGCAATGAGAAAG CATTTGCCTGATCTCTTTGAAGAACAACCTGATTTGCTTCATAAGCTGGTTACACAGCTTTCACCATCGATACTGAAATCTGAAGGTGTGCCAGTCTATC GGTGTGCGCAGAACCCTGGCGAGTTTGTTTTGACCTTTCCCCGGGCATACCATTCTGGGTTTAATTGTGGTTTCAATTGCGCCGAGGCAGTCAATGTTGC CCCCGTTGATTGGCTTCCCCATGGACAGATTGCCATAGAGCTTTACCGCGATCAAGCACGGCGAACTTCCATCTCTCATGACAAACTTTTGTTAGGGGCG GCAAGGGAAGCTGTGAAAGCTCATTGGGAGCTTAATTTACTGAGGCGGAACACTGCAGATAACTTAAGGTGGAAAGAAGTCTGTGGAAAAGAGGGCTTAT TAGCCAAGGCACTTAAGGCACGTGTGGACACGGAACGGATAATGAGGGAACTTCTCTGCAATACGTTGCAGACACTTAAGATGGACTCTAACTTCGATGC TACAACCGAAAGGGAATGTGCCGTTTGCCTTTTCGATTTACACCTCTCTGCAGCAGGGTGCAGTTGTTCCCCGGACAGGTACACATGCTTGAATCATGTT AAGCAGTTGTGCTCCTGTGCTTCTGGTGCCAGATATTTCCTCTTCCGGTACGAAATCGGTGATTTGGATGTCCTAGTAGAGGCATTGGAAGGGAAACTGA GTGCAGTGTATAGATGGGCAAGATCAGATCTTGGTCTAGCCCTCACATCCCATGTCACTGGGAAGAAGATTCAAGAAGGTAAGTTGTATGATTTTCCTGA AGCTACATTGGTTAAAGATGTGAAGTCACAAACAGCAAGGAATTTCCCCAGGGAGGTCAAGTTGGAAGGAACCTCTGTTAGGTCTCCAGAATCGGATGTG GCTAAAATGAAGTCCTTGAGTTCTGCCAACAATGAAGTTATTCTGCTTAGTGACGATGAGGAGGATGGACCGGTGAAGCCGGTTTTGGAGAGAGCTGAAG CAGAGGCAGAATTTTCTGCTAAGAAAACAGAACTATCAGATAAGCTATCCTCCTCCGATGATAGTCTATGTAACGGCAATCATACTTCGAGGATCCTAGT TGGACCCATCGTCGAGACGTTTACGAGAAAAAGCTCCATTTGCTCGTCAACTAATAGTCAAAGCTTAAGCAATGCTGTGGCAGTTTTGGAATCCAACCAA CCAAAAAACAGTTGTCGCATAGGATCGAACACTACAGGAGTTGGTAATTCAAGTGAAACCAGTAAGGGTGACAATATAGGAGACGCCGGAAGTCGGCAAC CGCATCATTCTAACCTTGGGAGAACCAACTACGACGATAGGATGGGTATAAGTGCAACCTCTAGTCCCGTCGATATGTCGAGAACTGCAACAGTGAGCCC GTCTTGCTTGCAACATAATTTGGATCGGTCTTTACGCCAAAAGGGTCCCCGCATTGCTAAGGTAGTGCGGAGAATCAATTGTAACGTTGAGCCTCAGGAG CTCGGAGCAGTTCTTTCAGGAAAAACATGGTGCAACAGTCAGTCAATTTTTCCCAAAGGATACAGGAGCCGGGTTAAGTATATAAGTGTATTGGATCCAT CAAGTATGTGTGACTATGTTTCTGAAATTCTGGATTCTGGAAGAAATGGACCTTTGTTCATGGTGTCCATTGAGCAGCATCCGGCAGAGTTATTTGTTCA TGTTTCAGCTACCAGATGCTGGGAAATGGTGAGAGAGAGGGTAAATCAAGAGATCGCGAAACAGCATAAATTGGGCAAACAAAACCTTCCTCCCTTGCAA CCTCCTGGGAGCCTTGATGGCTTCGAAATGTTTGGGTTCTCATCGCCAACAATTGTGCAGGTGAATCTGTCGGATCTAGTTTCCGCCTTTGCGTTTGTAC CATGCACTCCATTAACATTCAACATTGAACAGGCGATAGAAGCGCTGGACAGTGGCAGAGTCTGTACCGAGTATTGGGACTCTCGTCCCTATTCGAGGCC TCAAGGGCAGATACCGCTACGACCATCTCAAGCTCAACCTGGAACAGGTGGAGTGAGTTACAAGAAACCATCCCAGTGTTGGCCAGGCGAGGTAGATGAG ATCATGAGAGGGGTATTCAAGAAGGCAAACCCGGAGGAACTGAGCAAACTCAGTCGCCTTTTGAACGGAACAGGGACTTCAGCTGACGGAGGAGACTTAT TAACCAAACTTGTTAATGAGGAGATTAAAAATCGTATCTCGGTGGTAAAAACAAATTCAATGATTGGGTCTGGTTCGTGA
AA sequence Show only first row Show all	>Lus10022024 pacid=23160272 polypeptide=Lus10022024 locus=Lus10022024.g ID=Lus10022024.BGIv1.0 annot-version=v1.0 MQQQQLGGGAPDLAHLQSTMHAIELACSSIQMHTNSAAAEATILSLNQSTRPYKLCQFILENSQVASARFQAAAAIRDAAVREWSSLSGDDKKGLIGIEL TVAEKETFFYQVNQAIIGIHGTDVQFTGINFLESLVSEFSPSTSSAMGLPREFHEQCRKSLELQYLKVAAATFYCWAKDAAVSVATRITESNTEVPEVKV CTTGLRLMLQILNWEFQPSAKATAGINVYSPGIRIDATATKRSDCHVAQLGPAWRDALITSGHIGWIISLYVALREKFSGGTYWLDCPIAVSARKLIVQF CSVTGSIFLSGNDHMQENHLVQLLSGIMHWIDPPDRIAQTIESGRSESEMLDGCRALLSMATVANPFLFDNLLKSIRPFGTLTLLSNLMSEVIKVQMTKR SDEETWSWEARDILLDTWTTLLMPVESSGGNATIPQDGINAAANVFAFIAESELKAASASALDEDDGNDYLQASVSSMDERLISYALIGRAAVNVTIPLL SRLFSERVALLHQGRGIMDPTPTLEELYSLLLVIGHVLADEAEGETPVIPNSIQSHFGDTLDTENHPVVILSVSIIKFAEQSLNPEMRAAVFSPRLMEAV IWFLARWSCTYLLSEEIGESDLHLLQNSRKTLLSFFGEYNQGKIVLDIIVRVSVTTLTSYPGEKDLQALTCSQLLRALVRRRRICTSLILLDSWRELAST FANEEALFLLNAANQRSLAETLVRSASGIKKSESAYQYVRDLMGPVTKHLIELSSKSDLNNISEQPDIIFSLSCLLERLRGAARASEPRTQRALCEMGFS LLKPVLIFIEVYKNESTVIYLLLKFVVDWVDGQIAYLEARETSAVADFSTRLLQLYSSHNIGKISISLSSSLLSEANTEKYKDLRALLQLLSSFCSKDLV DFSSDSDESQSTNISEVVYLGLHIVTPLISLELLKYPKLCHDYFSLLSHMLEVYPETVVRLNSEAFLHVLGTLDFGLYHQDTEIVNMCLRSLKALAAYHY KATASGSLGLGSHATSVKDLHGNMQEGIFSRFLQVLLQLLLFEDYSPDLVSPAADALFPLILCEQSLYQKLGSELIERQANPEFKSRLANAFHMVTNSNQ LSSNLDRMNYQRFRKNVNAFLVEVMGTDFMRVCVKEESEEVPAVPPGFESFAAFSLKRVEDGGNKGNPVVISGSAVERASASQLMQIKSEPCIIDTQQEQ ISQNATSSSASASVGAFPPDQAKAEPQNSDATKIAAKSLRRKPWINHGHLEHCSEDDPKTAGVNQNANLRTSLPKGVIRGCPRCKDCQKVTARWRPEYAR RPDIEEAPVFYPTEEEFEDTLNYIASIRPKAEPYGICRIVPPPSWKPPCPLKEKSIWEGSKFSTRVQRVDKLQNRDSMIKLSKLNNHTRKKRRKCGRMAV DCGNDVGNKPELGDAAGVGLPETFGFDPGPEFDLSTFQKYADDFKAQFFRKDEDAENKSSLLNCEPTVENIEGEYWRIVEKATEEIEVLYGADLETGVFG SGFPKMCGEDGLVTVDRYTKSGWNLNNFPRLSGSVLSYESGDISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGAPKLWYGVPGKDALMLEEAMRK HLPDLFEEQPDLLHKLVTQLSPSILKSEGVPVYRCAQNPGEFVLTFPRAYHSGFNCGFNCAEAVNVAPVDWLPHGQIAIELYRDQARRTSISHDKLLLGA AREAVKAHWELNLLRRNTADNLRWKEVCGKEGLLAKALKARVDTERIMRELLCNTLQTLKMDSNFDATTERECAVCLFDLHLSAAGCSCSPDRYTCLNHV KQLCSCASGARYFLFRYEIGDLDVLVEALEGKLSAVYRWARSDLGLALTSHVTGKKIQEGKLYDFPEATLVKDVKSQTARNFPREVKLEGTSVRSPESDV AKMKSLSSANNEVILLSDDEEDGPVKPVLERAEAEAEFSAKKTELSDKLSSSDDSLCNGNHTSRILVGPIVETFTRKSSICSSTNSQSLSNAVAVLESNQ PKNSCRIGSNTTGVGNSSETSKGDNIGDAGSRQPHHSNLGRTNYDDRMGISATSSPVDMSRTATVSPSCLQHNLDRSLRQKGPRIAKVVRRINCNVEPQE LGAVLSGKTWCNSQSIFPKGYRSRVKYISVLDPSSMCDYVSEILDSGRNGPLFMVSIEQHPAELFVHVSATRCWEMVRERVNQEIAKQHKLGKQNLPPLQ PPGSLDGFEMFGFSSPTIVQVNLSDLVSAFAFVPCTPLTFNIEQAIEALDSGRVCTEYWDSRPYSRPQGQIPLRPSQAQPGTGGVSYKKPSQCWPGEVDE IMRGVFKKANPEELSKLSRLLNGTGTSADGGDLLTKLVNEEIKNRISVVKTNSMIGSGS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04490			unknown protein		Lus10022024 [exp]	0	1
AT3G04490			unknown protein		Lus10042566 [exp]	1.4	0.8960
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10034070 [exp]	1.4	0.9241
AT2G36480			ENTH/VHS family protein (.1.2....		Lus10035573 [exp]	3.2	0.8754
AT1G03000		PEX6	peroxin 6 (.1)		Lus10040918 [exp]	5.0	0.8878
AT3G48470		EMB2423	embryo defective 2423 (.1)		Lus10001101 [exp]	9.2	0.8919
					Lus10000409 [exp]	11.0	0.8743
AT3G51620			PAP/OAS1 substrate-binding dom...		Lus10006095 [exp]	11.8	0.8803
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10010527 [exp]	12.2	0.8555
AT5G27970			ARM repeat superfamily protein...		Lus10004115 [exp]	13.2	0.8563
AT5G16280			Tetratricopeptide repeat (TPR)...		Lus10021264 [exp]	16.4	0.8893

Compare expression of checked genes

Lus10022024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.