Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08610 504 / 2e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 308 / 2e-97 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 240 / 2e-71 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G63150 218 / 5e-63 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 219 / 9e-63 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63330 212 / 2e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 214 / 7e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62930 209 / 4e-60 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G63080 209 / 8e-60 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 209 / 9e-60 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042567 [exp] 989 / 0 AT1G08610 504 / 2e-174 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 214 / 7e-61 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012328 [exp] 211 / 8e-60 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 211 / 1e-59 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 210 / 4e-59 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 209 / 8e-59 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 208 / 2e-58 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012068 [exp] 209 / 6e-58 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 208 / 7e-58 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G019200 [exp] 600 / 0 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G109500 [exp] 303 / 2e-95 AT1G09900 855 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.013G047000 [exp] 234 / 1e-69 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 234 / 1e-69 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G457300 [exp] 233 / 3e-69 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 233 / 3e-68 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 234 / 8e-68 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G144300 [exp] 229 / 1e-67 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 226 / 3e-66 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G105600 [exp] 228 / 4e-66 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022025 pacid=23160255 polypeptide=Lus10022025 locus=Lus10022025.g ID=Lus10022025.BGIv1.0 annot-version=v1.0 ATGGGGCATACCGTTTCCCCACAGAAGTTTCTTGCTGAAGTTGGTGCTGTGGACCATCTCTCGACGACAAAGCTATCATTGCTGCACCATCTTAAATGCT CCCAACTATGCCTACGCCAGAAAGCTATCATTGCTAAAAGTCTTGTCATTGATGAGTGTGGAACTGACCAGAACACCGAGCACAGGATGATGAAGAAGAA CAAGAAGAAGAATAGATCATTGTTATCATCTTCAAGCGATGGATCTAACGACGAGGCAACAAACAATGAGATCCTCGAGTCCTTGTGCAGAAGAGGAAGG TTAACTGATGCAACAAAGCTGATAAAATCCATGGCACAGAGAAGCCAGATCCCTCTCTATTCATGCTGCATCAACTTAATCAGGGGTCTTGCTCGAACCC AACGGATAAACGAAGCTGTCAAAATCCTCGAAATCGTGGTATCGTATGGCGCTGTCCCTGATGTTATTACATACAATATGATGGTTGCTGGTTTCTGCAA ACGAGGACTCGTAACTTCAGCAGTCCACCTTGTGCAAGACATGAGCTTAAGTGGTTGTCCTCCGGATGTGATCACTTACAATACGGTCATTCGAGCCATG TTTCGAATGGGGGATTTCGAAGAAGCCATCACTTTCTGGAAGGGCCAACTAATGCGAGGCGGCCCTCCTTACTTGCTGAGCTACACAGTTCTCCTGGAGC TAGTCTGCAAGCATTGTGGGGCTATGCGTGCTGTGCAGGTATTGGAAGACATGGCCATGGAAGGTTGCTTCCCTGATCTCGTTGCGTACAATTCGTTAAT GAATCTTACTAGCAAACAAGGGAAGTTCGAAGATGCGACGTTAATACTAAGCACCATTTTGTCAAATGGAATGGAACCGGATGATTGGGTTTACAACACA CTCATCCACTCCCTCTCTAGCTTTGGGTACTGGGAAGAAGTTCGTGAGATTCTCGAACTCATGAAGAACAGTTCGTATCGTCCTACTGTGATTACCTACA ATCTCTTAATCAGCGGGTTGTGCAAGTGTGGAGATCTTTCCCATGCCATTGACTTCTTTGTTCTTATGTTAGACCGAAATCGCTCACCTGACATTGTAAC GTATAACATTCTGTTGGGTGGTTTATGCAGAGAAGGAATGGTGGATGAGGCTGTTCAATTACTCGACATTTTAGTTCGTAGTAGTAGTAGCTGTCGGCCT GGATTGATAAGTTACAACATTGTTATAGATGGACTCGGTCGAAGGGGCTACGCAGACAAAGCATACAAGTTATACATTCAGATGGTGGAAAATGGGATCT TGCCAGATGGTATTACTCACCGATGTCTTGCCTGGGCGTTTTGCTGGGCGGATCGAGTTGAAGAAGCTGTGGAGATATTGAAGGAGATGGTGAAGAGGGA TCAGCGTGTCAATGATGGTGTTTTCAGATCGGTGGTGAAGGGATTGTGTAGAAAGCAAAAAGTGGACACAGCAATACAAGTTTTGGAAGTGATGATCTGT GGAGGGTACAAGCCGGATGAGGATGTTTATGATGCTTTGATTAATGGTGTTGCGAAGTCTGGTATGATTCGTAAGGCTGATGAGTTGCGTAAGAGACTGC GGAAAATGGGAGTGTTGGCGACATCATTGTCCCTAACCAAGAATCTTAACTGA
AA sequence Show only first row Show all	>Lus10022025 pacid=23160255 polypeptide=Lus10022025 locus=Lus10022025.g ID=Lus10022025.BGIv1.0 annot-version=v1.0 MGHTVSPQKFLAEVGAVDHLSTTKLSLLHHLKCSQLCLRQKAIIAKSLVIDECGTDQNTEHRMMKKNKKKNRSLLSSSSDGSNDEATNNEILESLCRRGR LTDATKLIKSMAQRSQIPLYSCCINLIRGLARTQRINEAVKILEIVVSYGAVPDVITYNMMVAGFCKRGLVTSAVHLVQDMSLSGCPPDVITYNTVIRAM FRMGDFEEAITFWKGQLMRGGPPYLLSYTVLLELVCKHCGAMRAVQVLEDMAMEGCFPDLVAYNSLMNLTSKQGKFEDATLILSTILSNGMEPDDWVYNT LIHSLSSFGYWEEVREILELMKNSSYRPTVITYNLLISGLCKCGDLSHAIDFFVLMLDRNRSPDIVTYNILLGGLCREGMVDEAVQLLDILVRSSSSCRP GLISYNIVIDGLGRRGYADKAYKLYIQMVENGILPDGITHRCLAWAFCWADRVEEAVEILKEMVKRDQRVNDGVFRSVVKGLCRKQKVDTAIQVLEVMIC GGYKPDEDVYDALINGVAKSGMIRKADELRKRLRKMGVLATSLSLTKNLN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08610			Pentatricopeptide repeat (PPR)...		Lus10022025 [exp]	0	1
AT2G12646			PLATZ transcription factor fam...		Lus10008814 [exp]	5.7	0.9311
AT2G36780			UDP-Glycosyltransferase superf...		Lus10012148 [exp]	7.2	0.9310
AT1G07770		RPS15A	ribosomal protein S15A (.1.2)		Lus10043001 [exp]	8.2	0.9224
AT5G10830			S-adenosyl-L-methionine-depend...		Lus10024476 [exp]	9.6	0.9237
AT3G49950	GRAS		GRAS family transcription fact...		Lus10014852 [exp]	11.5	0.9171
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041224 [exp]	11.9	0.8667
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Lus10031260 [exp]	13.1	0.9157
AT3G18940			clast3-related (.1)		Lus10023834 [exp]	15.0	0.9009
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10038695 [exp]	15.3	0.9119
AT5G22060		ATJ2	ARABIDOPSIS THALIANA DNAJ HOMO...		Lus10028188 [exp]	15.4	0.9163

Compare expression of checked genes

Lus10022025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.