Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10095 291 / 4e-95 Protein prenylyltransferase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042569 [exp] 698 / 0 AT1G10095 387 / 2e-132 Protein prenylyltransferase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047100 [exp] 385 / 9e-132 AT1G10095 430 / 4e-149 Protein prenylyltransferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01239 [flax] [poplar] PPTA Protein prenyltransferase alpha subunit repeat
Representative CDS sequence Show only first row Show all	>Lus10022027 pacid=23160217 polypeptide=Lus10022027 locus=Lus10022027.g ID=Lus10022027.BGIv1.0 annot-version=v1.0 ATGGCTGAAAATATGATTCAAGGCGCACCCTTGGCGGATTTGCTAAATCAATTCGAGCGAATCCTCGATGAGGATCCCCTCATCAATGAAGTAGGGTTCA TTCACCCTTCGCAACTTGCTGCCTTGGAGAAACGAGCTGAAACCGACAGCTCACAATCGCAGAGCTCGAGTTCGTTGGATCGCGGAGATGACAATTTTTG GATTCAAAATCACAAACTGGGCATTTCCTCAGACGTTCTTCTACAATTGTACGCAGCTGCCAGGAAGGAATTCATGAATGCGGTCGTAGAATACAAGAAA CTTGGGGATCCATCTCATCCATCTGCTGAAGCTCTTGAAACCGCGGTCATGAAGCACAGCAAAGCACTTCTATTGTTGAGCCCTGATTTTGGGACTGCTT GGAATTCCAGAAAGTTAATTGCATCAAAGAAGCAGCAGACGTCAACGTTGGTCGATGAACTCCAGCTGTCTGCCCTTGTCCTTTCGTATTCGCCCAAGAG CGAGCAAGCCTGGTGCCATAGGAGGTGGGTTGTCAAGAATCTTGCCGTGAAATGTTCAACTTTACCAGAGATTCTGGATGAGGAATCTGACCTGGTAGAA AAGATAGCCGAGGTGCTACAACAACTGAAGAAATCCAAAACTTGGGCTGCATTAAATGTTGCTGATAATTCTTGCTTCCACTATCGTATGCGGCTGATAA TCAGAATTTTAGAGGAATGCTGCCGTAAGCAAGAAGAGGGATGCTGTGATTCTTGTGTTGAAGTTTACTGGCTTTGGCAGGAAGAGCTTGAATGGAACGA AGAGCTAATAAAGCGTTATTTAGGAAGGGAGGCTCTGTGGCTCTACCGTCGCTTTCTGTCCTTGTTATGGATAAGACATTTCGCAAGCGATGTCAACGAC GTATCTTCCCCGCAGAAAAGCAAATCCAGCATCCAAGTCAATGTCAGTATCTTTCTGGATAAGGAGTTACTCCTCGTCAATTCTTGTTCGGAAGTGCTCG ACGACGAGTTTGATGATTATGAAGCCCAAGCAATTTGTTCCGCATCCTATTTGTTATGGTTGACAAAGACATCTCTTTTGTGCCAGCAAATCCCGGAAAC CAGGAAGTCTGAAGTCAGAGATAAGATCGACAACGAACAGCTCAACACGATGCTGAAATTAGTAGCCCTGAAAGGACCTCCATTTGGGGCTATATAG
AA sequence Show only first row Show all	>Lus10022027 pacid=23160217 polypeptide=Lus10022027 locus=Lus10022027.g ID=Lus10022027.BGIv1.0 annot-version=v1.0 MAENMIQGAPLADLLNQFERILDEDPLINEVGFIHPSQLAALEKRAETDSSQSQSSSSLDRGDDNFWIQNHKLGISSDVLLQLYAAARKEFMNAVVEYKK LGDPSHPSAEALETAVMKHSKALLLLSPDFGTAWNSRKLIASKKQQTSTLVDELQLSALVLSYSPKSEQAWCHRRWVVKNLAVKCSTLPEILDEESDLVE KIAEVLQQLKKSKTWAALNVADNSCFHYRMRLIIRILEECCRKQEEGCCDSCVEVYWLWQEELEWNEELIKRYLGREALWLYRRFLSLLWIRHFASDVND VSSPQKSKSSIQVNVSIFLDKELLLVNSCSEVLDDEFDDYEAQAICSASYLLWLTKTSLLCQQIPETRKSEVRDKIDNEQLNTMLKLVALKGPPFGAI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10095			Protein prenylyltransferase su...		Lus10022027 [exp]	0	1
AT3G51390			DHHC-type zinc finger family p...		Lus10041837 [exp]	1.4	0.9116
AT1G10095			Protein prenylyltransferase su...		Lus10042569 [exp]	1.7	0.9351
AT5G41480		EMB9, ATDFA, GL...	GLOBULAR ARREST1, EMBRYO DEFEC...		Lus10014939 [exp]	3.0	0.9088
AT3G02600		ATLPP3, LPP3	lipid phosphate phosphatase 3 ...		Lus10009155 [exp]	5.7	0.9064
AT1G67490		KNOPF, KNF, GCS...	KNOPF, glucosidase 1 (.1.2)		Lus10015796 [exp]	8.2	0.8560
AT3G51390			DHHC-type zinc finger family p...		Lus10028384 [exp]	8.2	0.8708
AT5G52880			F-box family protein (.1)		Lus10027549 [exp]	9.9	0.8882
AT2G36360			Galactose oxidase/kelch repeat...		Lus10043424 [exp]	11.2	0.8584
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10006727 [exp]	11.7	0.8927
AT3G52640			Zn-dependent exopeptidases sup...		Lus10007387 [exp]	11.7	0.8973

Compare expression of checked genes

Lus10022027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.