Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23340 622 / 0 CKL10 casein kinase I-like 10 (.1) AT4G14340 606 / 0 CKL11, CKI1 CASEIN KINASE I-LIKE 11, casein kinase I (.1) AT1G03930 600 / 0 ADK1, CKL9ALPHA, CKL9BETA CASEIN KINASE I-LIKE 9 BETA, CASEIN KINASE I-LIKE 9 ALPHA, dual specificity kinase 1 (.1) AT4G28540 594 / 0 CKL6, PAPK1 casein kinase I-like 6 (.1) AT5G43320 590 / 0 CKL8 casein kinase I-like 8 (.1) AT1G04440 578 / 0 CKL13 casein kinase like 13 (.1) AT5G44100 573 / 0 CKL7 casein kinase I-like 7 (.1) AT1G72710 544 / 0 CKL2 casein kinase 1-like protein 2 (.1) AT4G26100 535 / 0 CKL1, CK1 casein kinase 1 (.1) AT5G57015 527 / 0 CKL12 casein kinase I-like 12 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042570 [exp] 868 / 0 AT3G23340 653 / 0.0 casein kinase I-like 10 (.1) Lus10014661 [exp] 735 / 0 AT3G23340 637 / 0.0 casein kinase I-like 10 (.1) Lus10000553 [exp] 732 / 0 AT3G23340 623 / 0.0 casein kinase I-like 10 (.1) Lus10021175 [exp] 643 / 0 AT4G14340 701 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10011812 [exp] 637 / 0 AT4G14340 705 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10033913 [exp] 595 / 0 AT4G28540 663 / 0.0 casein kinase I-like 6 (.1) Lus10024916 [exp] 587 / 0 AT4G14340 640 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Lus10022908 [exp] 553 / 0 AT4G28540 625 / 0.0 casein kinase I-like 6 (.1) Lus10027628 [exp] 542 / 0 AT4G26100 702 / 0.0 casein kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G070400 [exp] 654 / 0 AT3G23340 680 / 0.0 casein kinase I-like 10 (.1) Potri.013G047200 [exp] 652 / 0 AT4G14340 643 / 0.0 CASEIN KINASE I-LIKE 11, casein kinase I (.1) Potri.008G168100 [exp] 648 / 0 AT3G23340 656 / 0.0 casein kinase I-like 10 (.1) Potri.005G226900 [exp] 612 / 0 AT4G28540 645 / 0.0 casein kinase I-like 6 (.1) Potri.002G036000 [exp] 611 / 0 AT4G28540 650 / 0.0 casein kinase I-like 6 (.1) Potri.003G043500 [exp] 553 / 0 AT1G72710 640 / 0.0 casein kinase 1-like protein 2 (.1) Potri.001G197600 [exp] 545 / 0 AT1G72710 644 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G065900 [exp] 543 / 0 AT1G72710 678 / 0.0 casein kinase 1-like protein 2 (.1) Potri.006G147800 [exp] 541 / 0 AT1G72710 674 / 0.0 casein kinase 1-like protein 2 (.1) Potri.018G084500 [exp] 500 / 4e-176 AT4G28880 632 / 0.0 casein kinase I-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022029 pacid=23160207 polypeptide=Lus10022029 locus=Lus10022029.g ID=Lus10022029.BGIv1.0 annot-version=v1.0 ATGGATCATCTTGTCGGTGGGAAATTTAAGCTTGGCCGGAAGATCGGCAGTGGCTCCTTTGGGGAGCTATACATTGCTGTTAACGTCCAAACAGGAGAAG AAGTTGGCGTGAAGCTGGAGCCTACAAAGACCAAACATCCCCAGCTGCAGTATGAGTCTAAAATTTATATGATTCTTCAAGGGGGAACTGGAATTCCCGA GCTTAAGTGGTATGGTGTTGAGGGTGACTATAATGTCATGGTTATCGACCTTCTGGGTCCAAGCCTAGAAGACTTGTTCAACTACTGCAACCGAAAATTA TCTTTGAAGACAGTTCTGATGCTTGCAGATCAGTTGATTAATAGAATTGAGTATATGCACTCAAGGAGTTTCCTCCACCGTGATATAAAGCCTGACAACT TTCTAATGGGTTTAGGACGCAAGGCCAATCAGGTGTATGTTATTGACTATGGACTTGCTAAGAAGTACAGAGATCTTCAAACTCATAAGCACATACCATA TAGGGAAAACAAAAATCTTACAGGCACGGCTAGATATGCTAGCGTTAACACTCATCTTGGAGTTGAGCAAAGCAGAAGAGATGACTTGGAATCCCTTGGT TATGTGCTCATGTACTTCTTAAGAGGAAGCCTTCCATGGCAGGGTCTGAAGGCTGGAAATAAAAAACAGAAGTATGATAAGATTAGTGAGAAGAAGATGT TAACGCCCATTGAGGTTCTATGCAAGTCATATCCGTCAGAGTTCACATCATACTTCCATTACTGTAGATCGTTACGGTTTGATGACAAACCAGATTATGC ATATTTGAAAAAGCTGTTTCGTGACCTTTTTGTGCGAGAAGGGTATCAGTTTGACTACATATTTGACTGGACTATATTGAAGTACCCACAAATAGGCTCC AGCTCTAGACATAGGGCCATTGGCAAAACGGGAACAAAACCACAAGCAACCAGTGACAAGCCAGAAAAGCCATCAGAGACTCGTGAAAAATCATCAGGAA CCGATGCTCTAGGTAGAAAGAGTGCGCCTGTTAGTGGGCATCGGGAGCGCTCAAAGCACAGGCAAGGAGATGATGCCTCTTCTTCCAAGGACAATCGATC TGATGTAGAGAAAAACCGAGCATCTTCCTCCCGCAACACGTCGAAGAAGGCTGTGGCTTCCTCCAGCAGGCTAAGCTCGTCAAATGTAGGGACCGAAAGT CGATCAAGCTGGCTCTTCTCTAACAGCAGCCGTCTCTCAACCACTCAGAGAATCCATGCCGGGTCCGATACGAAAGCATCAGCCTCGAACCATGGCACAC CTGCACGGGAAGCTCGTGATGACCAGCTTCGCAGTTTTGAGAACCTTGCCATTGATGCTGACAGGAGGAGACGGTGA
AA sequence Show only first row Show all	>Lus10022029 pacid=23160207 polypeptide=Lus10022029 locus=Lus10022029.g ID=Lus10022029.BGIv1.0 annot-version=v1.0 MDHLVGGKFKLGRKIGSGSFGELYIAVNVQTGEEVGVKLEPTKTKHPQLQYESKIYMILQGGTGIPELKWYGVEGDYNVMVIDLLGPSLEDLFNYCNRKL SLKTVLMLADQLINRIEYMHSRSFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHKHIPYRENKNLTGTARYASVNTHLGVEQSRRDDLESLG YVLMYFLRGSLPWQGLKAGNKKQKYDKISEKKMLTPIEVLCKSYPSEFTSYFHYCRSLRFDDKPDYAYLKKLFRDLFVREGYQFDYIFDWTILKYPQIGS SSRHRAIGKTGTKPQATSDKPEKPSETREKSSGTDALGRKSAPVSGHRERSKHRQGDDASSSKDNRSDVEKNRASSSRNTSKKAVASSSRLSSSNVGTES RSSWLFSNSSRLSTTQRIHAGSDTKASASNHGTPAREARDDQLRSFENLAIDADRRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10022029 [exp]	0	1
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10018010 [exp]	5.5	0.8000
AT4G33140			Haloacid dehalogenase-like hyd...		Lus10039915 [exp]	8.4	0.7502
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10007692 [exp]	11.2	0.8165
AT3G23340		CKL10	casein kinase I-like 10 (.1)		Lus10042570 [exp]	11.7	0.7858
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	13.7	0.7596
AT1G50120			unknown protein		Lus10040977 [exp]	16.8	0.8050
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10033711 [exp]	27.9	0.7676
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10042006 [exp]	28.0	0.7398
AT3G28715			ATPase, V0/A0 complex, subunit...		Lus10005252 [exp]	28.5	0.7869
AT4G34450			coatomer gamma-2 subunit, puta...		Lus10026336 [exp]	29.3	0.7962

Compare expression of checked genes

Lus10022029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.