Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G46600 187 / 2e-53 Aluminium activated malate transporter family protein (.1) AT4G17970 181 / 4e-51 ATALMT12, ALMT12 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) AT5G46610 174 / 1e-48 Aluminium activated malate transporter family protein (.1.2.3) AT4G00910 172 / 2e-48 Aluminium activated malate transporter family protein (.1) AT1G08440 169 / 2e-47 Aluminium activated malate transporter family protein (.1) AT1G08430 158 / 3e-43 ALMT1, ATALMT1 ARABIDOPSIS THALIANA ALUMINUM-ACTIVATED MALATE TRANSPORTER 1, aluminum-activated malate transporter 1 (.1) AT3G11680 157 / 6e-43 Aluminium activated malate transporter family protein (.1) AT2G27240 150 / 2e-40 Aluminium activated malate transporter family protein (.1) AT3G18440 132 / 2e-33 ATALMT9 aluminum-activated malate transporter 9 (.1) AT1G68600 125 / 3e-31 Aluminium activated malate transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042571 [exp] 548 / 0 AT5G46600 192 / 6e-56 Aluminium activated malate transporter family protein (.1) Lus10030975 [exp] 190 / 1e-54 AT4G17970 643 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10004556 [exp] 186 / 3e-53 AT4G17970 649 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10000898 [exp] 181 / 3e-51 AT4G17970 666 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Lus10013577 [exp] 172 / 2e-48 AT3G11680 524 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10021272 [exp] 168 / 1e-46 AT3G11680 535 / 0.0 Aluminium activated malate transporter family protein (.1) Lus10001849 [exp] 155 / 3e-42 AT1G08440 389 / 1e-131 Aluminium activated malate transporter family protein (.1) Lus10033223 [exp] 145 / 2e-38 AT4G00910 490 / 5e-171 Aluminium activated malate transporter family protein (.1) Lus10001528 [exp] 144 / 5e-38 AT4G00910 490 / 2e-170 Aluminium activated malate transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208500 [exp] 375 / 3e-127 AT4G17970 228 / 4e-69 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.002G054300 [exp] 372 / 4e-126 AT5G46600 252 / 3e-78 Aluminium activated malate transporter family protein (.1) Potri.002G174600 [exp] 194 / 2e-56 AT4G00910 533 / 0.0 Aluminium activated malate transporter family protein (.1) Potri.001G144300 [exp] 192 / 1e-55 AT4G17970 634 / 0.0 "aluminum-activated, malate transporter 12", aluminum-activated, malate transporter 12 (.1) Potri.001G085900 [exp] 188 / 4e-54 AT4G00910 508 / 9e-178 Aluminium activated malate transporter family protein (.1) Potri.003G145000 [exp] 185 / 5e-53 AT4G00910 484 / 5e-168 Aluminium activated malate transporter family protein (.1) Potri.009G017800 [exp] 167 / 2e-46 AT2G27240 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.009G017900 [exp] 159 / 8e-44 AT1G08440 389 / 3e-131 Aluminium activated malate transporter family protein (.1) Potri.001G217400 [exp] 158 / 4e-43 AT1G08440 451 / 2e-155 Aluminium activated malate transporter family protein (.1) Potri.006G203100 [exp] 158 / 4e-43 AT3G11680 470 / 4e-163 Aluminium activated malate transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0307 [flax] [poplar] FUSC PF11744 [flax] [poplar] ALMT Aluminium activated malate transporter
Representative CDS sequence Show only first row Show all	>Lus10022030 pacid=23160223 polypeptide=Lus10022030 locus=Lus10022030.g ID=Lus10022030.BGIv1.0 annot-version=v1.0 ATGGATTCGTCGGCGGCCGTAATAGACATCAACGATAACGTAGCAACGAAAGGGACCAAGATGATGGAGGAGGAGGCGGCGGCTGTGGTGGAGAATGGTG GCGGGGGAGGCGGGGGGATGAAGATGGTGAGAAAATGGGTGCACAGTGTGAAAGTGGGAGTAGCGGTGGTGATTGTATCGCTACTCTACTTCTTGGACCC TCTTTACAAGGAAGTCGGCGACGACAATGCCATTTGGGCTATTATGACCGTTGTTGTCATCTTCGAGTTCCATGCTGGTGCGACAGTGAGCAAGGGAGTG AACCGGGTTATAGGAACGGTAGTGGGAGGCGGGTTTGGGTGCTTGGTGGCCACAGCGGGTCAGAAAGTTGGCGGTATTGGCAACTCCATCATCGTTGGAG TTACTGTCTTTGCTGTCGCGGGAGGAGCGACATACTACAGGCAGATTCAGAGGAAGAAGTTGTTCGACTACGGGGCGAATATCTTCATCCTGACGTTCAG TCTGGTGGCGGTCTCGGGGCTTCGAATCGAGAACGTGATAGAGATAGCGAGGGAGAGACTGTTGATGATACTGTTGGGATTCATGACCTGCGTCTTCACA AGCTTGTTCTTCTTCCCCATATGGGCTAGCGACGAGCTCCACTCCTCCTTGTCTTCCAGATTCCATCAACTTGCTGCTTCCCTCCAAGGGTGTGTGGAGG AGTACTTCAGAATGGAAGAGAAGACTAATGATGCAGACGAGTCTAAGCAGCAGCCAGTTATCGATGAGTGTTTCAAGAGTTGTCAGGCCGTCCTGCTGGC CAAGTGTAAAGATGATTCTTTGGTAATTTCAGCGAGATGGGAGCCATGGCATGGTAAATTTGGGCTATCATATCCTTGGGACAGATACAATCAAACTTCC CAAATTCTCAGTGACTTGGCCGCATCCATCCTTTCCCTCAAATTCTGTCTCAAATCTCCTAGACAGCCACGTGATAATAATAATGATAATGATGGTGATG ATGATGATCAGAGCAGCAGGGAATCAATCAAAGAGCCGTGCGAAGCTGCCGCAGCATCACTGGCGTGGAGCCTGGGAGAGCTGGGAGACAGCATCCGGAG AATGAGGAGGTGTAATACGGAAGCTTCCATCGTGCCCGAGTTGAAATCGGCCAGGCTAGAGCTCAGCAGGATTGTCGTTACGACACCCTTTAATCCAGAG GCTCTCGGGATGGCGACCTTGGTGTTTAAGTTGACTGAGATGGTTGAGGTTTTGGAGGAGCTGGCTAAGCAAGTTGAGGAGCTCGCCCAAACCGCTGGTT TCCATGAAACCTGA
AA sequence Show only first row Show all	>Lus10022030 pacid=23160223 polypeptide=Lus10022030 locus=Lus10022030.g ID=Lus10022030.BGIv1.0 annot-version=v1.0 MDSSAAVIDINDNVATKGTKMMEEEAAAVVENGGGGGGGMKMVRKWVHSVKVGVAVVIVSLLYFLDPLYKEVGDDNAIWAIMTVVVIFEFHAGATVSKGV NRVIGTVVGGGFGCLVATAGQKVGGIGNSIIVGVTVFAVAGGATYYRQIQRKKLFDYGANIFILTFSLVAVSGLRIENVIEIARERLLMILLGFMTCVFT SLFFFPIWASDELHSSLSSRFHQLAASLQGCVEEYFRMEEKTNDADESKQQPVIDECFKSCQAVLLAKCKDDSLVISARWEPWHGKFGLSYPWDRYNQTS QILSDLAASILSLKFCLKSPRQPRDNNNDNDGDDDDQSSRESIKEPCEAAAASLAWSLGELGDSIRRMRRCNTEASIVPELKSARLELSRIVVTTPFNPE ALGMATLVFKLTEMVEVLEELAKQVEELAQTAGFHET

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G46600			Aluminium activated malate tra...		Lus10022030 [exp]	0	1
AT5G14180		MPL1	Myzus persicae-induced lipase ...		Lus10022349 [exp]	1.4	0.9282
AT3G27960			Tetratricopeptide repeat (TPR)...		Lus10008786 [exp]	2.0	0.9280
AT3G23590		MED33A, RFR1	REF4-related 1 (.1)		Lus10034021 [exp]	4.7	0.8781
AT5G46600			Aluminium activated malate tra...		Lus10042571 [exp]	4.9	0.8821
AT1G17950	MYB	AtMYB52, BW52, ...	myb domain protein 52 (.1)		Lus10031900 [exp]	5.3	0.9069
AT2G43120			RmlC-like cupins superfamily p...		Lus10019561 [exp]	6.0	0.8794
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10017466 [exp]	6.7	0.9004
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10021164 [exp]	11.5	0.9137
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Lus10011799 [exp]	15.0	0.8758
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Lus10033993 [exp]	16.1	0.8766

Compare expression of checked genes

Lus10022030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.