Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022031 pacid=23160289 polypeptide=Lus10022031 locus=Lus10022031.g ID=Lus10022031.BGIv1.0 annot-version=v1.0 ATGAGTGTTGATCCACCTCCAACGAGATTACAACCCGACAACGAAGAGCAAGGGGTCAGGGGCGATGGTATTCGTTGGATCCTTGAAGGAAGGGTGAAGG ACCTCGATCCCTTGCGGAGCCGGATTTTTTATGAAGAGGAGAAGGCCACCGGAGGCGTGTGCACGCGTGTGACGTTGGCTTACGGCGGCAGGGATCATCC AACAGACATCGACGGAAGAGGTGAGGAGATATCCAGCAAGAAACAGCAATTTCCAGAATGTTTGGAGCTCGCCGGAATCTGGGGAGAGCTCGCCGCCGGC GACACCAGTAACCGGAGCTGGAGGTGGAAGACGAGTGACTGTCCTGCAATCTTGGAGGAGTCTAGTGACCTTACCGCATGCCGGAGAAGTTAA
AA sequence Show only first row Show all	>Lus10022031 pacid=23160289 polypeptide=Lus10022031 locus=Lus10022031.g ID=Lus10022031.BGIv1.0 annot-version=v1.0 MSVDPPPTRLQPDNEEQGVRGDGIRWILEGRVKDLDPLRSRIFYEEEKATGGVCTRVTLAYGGRDHPTDIDGRGEEISSKKQQFPECLELAGIWGELAAG DTSNRSWRWKTSDCPAILEESSDLTACRRS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10022031 [exp]	0	1
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Lus10027337 [exp]	1.0	0.9145
					Lus10000510 [exp]	2.0	0.8948
AT3G51710			D-mannose binding lectin prote...		Lus10025259 [exp]	2.0	0.8903
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Lus10007613 [exp]	5.3	0.8700
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10018207 [exp]	5.5	0.8722
AT4G22758			unknown protein		Lus10000386 [exp]	5.5	0.8906
AT1G01550		BPS1	BYPASS 1, Protein of unknown f...		Lus10039581 [exp]	7.3	0.8855
AT5G47070			Protein kinase superfamily pro...		Lus10001088 [exp]	7.5	0.8841
AT1G64610			Transducin/WD40 repeat-like su...		Lus10017312 [exp]	7.9	0.8619
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10029882 [exp]	12.7	0.8585

Compare expression of checked genes

Lus10022031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.