Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G09820 178 / 6e-50 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G41315 105 / 7e-24 bHLH MYC6.2, GL3 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G63650 103 / 3e-23 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G17880 84 / 4e-17 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G32640 82 / 2e-16 bHLH JIN1, JAI1, ZBF1, RD22BP1, ATMYC2 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT5G46760 81 / 7e-16 bHLH bHLH005, ATR2, MYC3 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT1G12860 78 / 3e-15 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 75 / 3e-14 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT4G00480 74 / 1e-13 bHLH ATMYC1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G37850 72 / 2e-13 bHLH bHLH025 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042572 [exp] 314 / 3e-106 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10032267 [exp] 99 / 1e-21 AT5G41315 487 / 2e-165 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10024631 [exp] 95 / 2e-20 AT1G63650 470 / 3e-159 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030970 [exp] 89 / 2e-18 AT1G32640 630 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000037 [exp] 82 / 9e-18 AT4G17880 300 / 3e-99 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10000484 [exp] 82 / 4e-16 AT4G17880 562 / 0.0 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004574 [exp] 81 / 5e-16 AT1G32640 618 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10004575 [exp] 81 / 5e-16 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10003488 [exp] 77 / 6e-15 AT4G37850 212 / 6e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208600 [exp] 303 / 2e-95 AT4G09820 296 / 2e-92 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G054100 [exp] 301 / 2e-94 AT4G09820 317 / 6e-100 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G159400 [exp] 104 / 1e-23 AT5G41315 483 / 2e-163 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G103600 [exp] 104 / 1e-23 AT5G41315 582 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G128000 [exp] 100 / 2e-22 AT5G41315 561 / 0.0 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G083900 [exp] 86 / 2e-17 AT5G41315 464 / 5e-156 GLABROUS 3, GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.009G081400 [exp] 81 / 2e-16 AT4G37850 209 / 3e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G095250 [exp] 78 / 1e-15 AT4G37850 213 / 5e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G142200 [exp] 79 / 2e-15 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.001G287200 [exp] 74 / 4e-14 AT4G37850 215 / 7e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10022032 pacid=23160218 polypeptide=Lus10022032 locus=Lus10022032.g ID=Lus10022032.BGIv1.0 annot-version=v1.0 ATGTCAAATACTACTACGCCGCCGCCGCTGCCGCCGCACCACCAACGACAGCAGCTGCAGGACATGGTACAGGCCGCCGGGCCGCCGGGCGGAGGGTCGG TGGCGGCCGTGCAGTCGGTGCAATGGACTTACTGTATCTTCTGGCAATTCTGCCCCCACCGAGGTTTCTTCACGGACCACAACTATCAACACCCACCTGC ACCAAAGCCAGCACTCTCCGGCCATTCCACTTCCGATCCCTCCGCTTCCTCCGCCTTCCATTCTCCTCCTCTCTTCCCTCCCGTCTTCACCCCAATCCAC CTCCACTACCAGGATGACCCGGAAGACGATCTAGAAATCGACAATAATATCAACGATACTGAAAACAACGACCATGACGATGCAGGCTCTGAAAACCCTG ATCCGGAAACAGAGCACCACGACGCAATGCCGGTGGCGGCAGAATCAGTATCCCAGCCGCCGACCGAGCTAATGCAGCTTGATATGTCGGAGGATATCCG GCTCGGCTCACCCGACGAATGCTCCAATCAGTTGGGCTCCTCCACCTTCAATCTGATCGGATCCGACGATCCAATCCCACCGGATCGACCTCAGCGGTGG AGATTCACGATGGAAGAAGAAGAAGAAGGCGACGATTGTTTCGAGTTGGATAGAGAAGACACGCATTACTCCCACACCGTTTCGGCTGTCCTCCAAAACA ACCGGCTTGGATGGTCAACATCGGGCCCCACTTCCTCAGCGCATCATACAGCTTTCACCACGTGGACACGCGACGGGGATGGCGATTTTGTCGTGCCTAA CAGAAAGACGTCGTCGTCCCAGTGGGCACTGAAGCACATTCTGTTCAACGTGCCTTACCTCCACAACAAGTACAGGGAAGAGAATGGGAACAACTCGCCG AAATCAAGCTGCGGCGGTGCTGGCGGCGGAGGATCAAGGTTGCGGAAGGGGAACAGTAGTCAGGACCGGAGGGAGAAGCTGAATGAGAGGTTCATCGTGT TGAGATCTCTGGTTCCTTTCGTAACGAAGATGGACAAGGCGTCGATCTTAGGGGACGCGATCGAGTATTTGAAGCAGCTGCGGAAGAAGATCCAGGATCT GGAGGCGAGGAATCATCAGTTTGAAGCGGATCCGCAGAGGAGCGGGTCTGGATATGAGAATAAGAAGATGAGGACGGCGGCGGAGGCGGAAAGGGGAAGA ACTCCGACGAAGCCGACAGAGACGAGCGTGGAGGTGTCGATAATAGAGAAGGACGCGCTGCTGGAGCTGGAGTGCGAGCACAGGGAAGGACTGCTGCTTG ACATGATGCTGAAGCTGAGGGAAATGAGGATTGAGGTCACCGCCGTTCAGTCGTCTCTGAGTGATGGCGTATTGGTTGCTGAACTTCGAGCTAAGGTGAA GGAGAACGTTGGAGGTAAGAAAGTGAGCATCGTGGAAGTAAAGAGGGCCATAAATGGAATAATACAGTCTTGA
AA sequence Show only first row Show all	>Lus10022032 pacid=23160218 polypeptide=Lus10022032 locus=Lus10022032.g ID=Lus10022032.BGIv1.0 annot-version=v1.0 MSNTTTPPPLPPHHQRQQLQDMVQAAGPPGGGSVAAVQSVQWTYCIFWQFCPHRGFFTDHNYQHPPAPKPALSGHSTSDPSASSAFHSPPLFPPVFTPIH LHYQDDPEDDLEIDNNINDTENNDHDDAGSENPDPETEHHDAMPVAAESVSQPPTELMQLDMSEDIRLGSPDECSNQLGSSTFNLIGSDDPIPPDRPQRW RFTMEEEEEGDDCFELDREDTHYSHTVSAVLQNNRLGWSTSGPTSSAHHTAFTTWTRDGDGDFVVPNRKTSSSQWALKHILFNVPYLHNKYREENGNNSP KSSCGGAGGGGSRLRKGNSSQDRREKLNERFIVLRSLVPFVTKMDKASILGDAIEYLKQLRKKIQDLEARNHQFEADPQRSGSGYENKKMRTAAEAERGR TPTKPTETSVEVSIIEKDALLELECEHREGLLLDMMLKLREMRIEVTAVQSSLSDGVLVAELRAKVKENVGGKKVSIVEVKRAINGIIQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G09820	bHLH	BHLH42, TT8, bH...	TRANSPARENT TESTA 8, basic hel...		Lus10022032 [exp]	0	1
AT4G10270			Wound-responsive family protei...		Lus10033729 [exp]	1.4	0.8333
AT2G03350			Protein of unknown function, D...		Lus10030420 [exp]	1.4	0.8121
AT3G22550			Protein of unknown function (D...		Lus10007668 [exp]	8.5	0.7130
AT4G32790			Exostosin family protein (.1)		Lus10014425 [exp]	9.5	0.7923
AT1G47670			Transmembrane amino acid trans...		Lus10015997 [exp]	10.6	0.7857
AT5G62440			Protein of unknown function (D...		Lus10024968 [exp]	11.0	0.7799
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10001886 [exp]	13.7	0.7445
AT4G18650			transcription factor-related (...		Lus10029229 [exp]	14.7	0.7540
AT4G10270			Wound-responsive family protei...		Lus10031616 [exp]	17.6	0.7482
AT1G61700			RNA polymerases N / 8 kDa subu...		Lus10013128 [exp]	20.3	0.7143

Compare expression of checked genes

Lus10022032 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.