Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02820 469 / 7e-163 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G60770 245 / 3e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27460 242 / 5e-75 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02150 236 / 3e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G01990 209 / 2e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20710 199 / 1e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G21705 193 / 2e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02370 191 / 3e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G09450 154 / 2e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G80270 148 / 3e-39 PPR596 PENTATRICOPEPTIDE REPEAT 596 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042574 [exp] 822 / 0 AT4G02820 565 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013047 [exp] 273 / 8e-87 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008724 [exp] 247 / 1e-76 AT5G27460 492 / 6e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021053 [exp] 230 / 4e-70 AT1G02370 494 / 3e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004173 [exp] 209 / 4e-63 AT1G02370 419 / 1e-143 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009787 [exp] 206 / 5e-61 AT1G02150 600 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024781 [exp] 203 / 9e-60 AT1G02150 599 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000091 [exp] 189 / 1e-55 AT4G21705 426 / 8e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005855 [exp] 189 / 7e-55 AT4G21705 503 / 5e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G208900 [exp] 539 / 0 AT4G02820 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G079600 [exp] 259 / 1e-81 AT1G60770 701 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G157400 [exp] 256 / 2e-80 AT1G60770 682 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G050300 [exp] 241 / 3e-74 AT1G02150 698 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G160100 [exp] 236 / 2e-72 AT5G27460 532 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G139400 [exp] 228 / 5e-69 AT1G02150 714 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G120900 [exp] 208 / 5e-62 AT4G21705 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G042500 [exp] 207 / 7e-62 AT4G21705 608 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G194400 [exp] 204 / 3e-60 AT1G02370 466 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G051500 [exp] 203 / 4e-60 AT4G21705 605 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10022033 pacid=23160211 polypeptide=Lus10022033 locus=Lus10022033.g ID=Lus10022033.BGIv1.0 annot-version=v1.0 ATGAATCTACAGCCTGATATCAAGCTTGTAGCAGGAGATTACGCAGTCCATCTTGATTTGGTTGCAAAAGTACGGGGTCTGCCCAGTGCCGAGAAGTTCT TTGAAGATCTTCCTGATAACATGAGAGGCAGTCTAGCATGTACATCTCTTCTACATACATATGTCCAGAACAAGGTGCCTGAGAAAGCTGAAGCTTTGAT GGAGAAAATGACCGAATGTGGTTTCCTGAAGAACCCGTTGCCTTTTAACCACATGCTATCTATGTACATTGCGAATAAGCAATTGGAGAAGGTTCCAGAA GTTATTCAGAAGCTGAGAACACATACTACACCTGACATTTTCACGTACAATCTGTGGTTAACCGCTTGTGCAGGAGAGGATGATGAAGAAACTGTTGAAA AGGTGTTCAAGGAGCTGAAGAAGGTGATGTTAGAGCCAGACTGGGTAACCTACAGCATATTGGCGAATCTCTACGTTAAAAAGAAGCTTCACGAAAGAGC ATTGCCTATGTTGAAGGAAATGGAGAAAATGGCTTCGCGTAACAATCGACTTACCTATCCTTCTTTGATCAGTTTGTACACGGCCATTGGAGATAGTGAT GCTGTTCATCGGATCTGGGATCAGCTGAAATCATGCTTTGGTAAGATGAATCGTAAGATGTACGATGCAGAGTACATATGCATGATGACGTCTCTAGTTA AGCTTAATGAAGTCTCAGAAGCTGAGAAGGTTTTTGGCGAATGGGAGTCGATCTCTACCAGCGTTCATCCTGGAATTCCGAATGTGCTCCTTGCTGCATA TATCAACAACAACCAGATGGAAGAGGCTCGAAAATTGCACAAGCGCATGGAAAAAAAGCACGTGCCTCCTTGTTACACAACATGGGAGCTCCTGACTTCG ATGCATCTGAAAACAGGGCAGATAAAGGCGGCACTGGATTGCTTCGAGAAAGCCGTTGCTTGTGTCAAGAAATGGAACCCCGACACGGAGTGGATTCAAC AAGTGTTCGAAGTGCTTGAGCAGCAGGGTAATATCGAAGGAGCGGAGAAGTTCTTGGCCATTGTCCGGGATGCTGGACACTCGAGTACCGAGGTGTACAA TTCTCTTCTGAGAACTTATGTACATGCTGGTAAGATGCCGCTTATAGTAATGGAGCGTATGAAGAAAGATAATGTCGAGCTGGATAACGAAACACACGAG CTCATAGAAAAGACCCGTAACATGCCTGTCAGTGAAGCTGGAAGTTTCATAACTTGA
AA sequence Show only first row Show all	>Lus10022033 pacid=23160211 polypeptide=Lus10022033 locus=Lus10022033.g ID=Lus10022033.BGIv1.0 annot-version=v1.0 MNLQPDIKLVAGDYAVHLDLVAKVRGLPSAEKFFEDLPDNMRGSLACTSLLHTYVQNKVPEKAEALMEKMTECGFLKNPLPFNHMLSMYIANKQLEKVPE VIQKLRTHTTPDIFTYNLWLTACAGEDDEETVEKVFKELKKVMLEPDWVTYSILANLYVKKKLHERALPMLKEMEKMASRNNRLTYPSLISLYTAIGDSD AVHRIWDQLKSCFGKMNRKMYDAEYICMMTSLVKLNEVSEAEKVFGEWESISTSVHPGIPNVLLAAYINNNQMEEARKLHKRMEKKHVPPCYTTWELLTS MHLKTGQIKAALDCFEKAVACVKKWNPDTEWIQQVFEVLEQQGNIEGAEKFLAIVRDAGHSSTEVYNSLLRTYVHAGKMPLIVMERMKKDNVELDNETHE LIEKTRNMPVSEAGSFIT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02820			Pentatricopeptide repeat (PPR)...		Lus10022033 [exp]	0	1
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	1.7	0.8651
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10000091 [exp]	6.3	0.8418
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022346 [exp]	6.9	0.8562
AT4G26680			Tetratricopeptide repeat (TPR)...		Lus10009548 [exp]	8.1	0.8355
AT1G59720		CRR28	CHLORORESPIRATORY REDUCTION28,...		Lus10037229 [exp]	8.4	0.8304
AT1G70600			Ribosomal protein L18e/L15 sup...		Lus10006207 [exp]	8.9	0.8629
AT1G56345			Pseudouridine synthase family ...		Lus10020693 [exp]	9.8	0.7839
AT5G13230			Tetratricopeptide repeat (TPR)...		Lus10038839 [exp]	11.2	0.8255
AT4G00390	GeBP		DNA-binding storekeeper protei...		Lus10005506 [exp]	15.0	0.7880
AT3G57070			Glutaredoxin family protein (....		Lus10018025 [exp]	17.5	0.8066

Compare expression of checked genes

Lus10022033 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.