Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03170 83 / 7e-19 FAF2 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) AT4G02810 77 / 1e-16 FAF1 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) AT5G22090 66 / 4e-12 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) AT3G06020 50 / 5e-07 FAF4 FANTASTIC FOUR 4, Protein of unknown function (DUF3049) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042576 [exp] 373 / 6e-132 AT5G19260 95 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10014665 [exp] 155 / 5e-46 AT1G03170 76 / 1e-15 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Lus10000655 [exp] 149 / 8e-44 AT5G19260 81 / 7e-18 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10010520 [exp] 94 / 2e-22 AT5G19260 96 / 4e-23 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10034061 [exp] 89 / 1e-20 AT5G19260 92 / 2e-21 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10041217 [exp] 82 / 3e-18 AT5G19260 111 / 5e-29 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Lus10004098 [exp] 76 / 2e-15 AT5G22090 200 / 3e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10013353 [exp] 67 / 2e-12 AT5G22090 199 / 8e-58 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Lus10021930 [exp] 59 / 2e-10 AT5G19260 68 / 5e-14 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G209100 [exp] 135 / 2e-38 AT1G03170 89 / 8e-21 FANTASTIC FOUR 2, Protein of unknown function (DUF3049) (.1) Potri.002G053400 [exp] 122 / 2e-33 AT4G02810 70 / 9e-14 FANTASTIC FOUR 1, Protein of unknown function (DUF3049) (.1) Potri.008G149600 [exp] 93 / 6e-22 AT5G19260 95 / 3e-22 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.009G016600 [exp] 87 / 1e-19 AT5G22090 195 / 4e-56 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.010G091800 [exp] 83 / 2e-18 AT5G19260 104 / 8e-26 FANTASTIC FOUR 3, Protein of unknown function (DUF3049) (.1) Potri.001G216000 [exp] 71 / 7e-14 AT5G22090 172 / 1e-47 Protein of unknown function (DUF3049) (.1), Protein of unknown function (DUF3049) (.2) Potri.005G037600 [exp] 42 / 0.0002 AT1G54740 104 / 7e-26 Protein of unknown function (DUF3049) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11250 [flax] [poplar] FAF Fantastic Four meristem regulator
Representative CDS sequence Show only first row Show all	>Lus10022036 pacid=23160290 polypeptide=Lus10022036 locus=Lus10022036.g ID=Lus10022036.BGIv1.0 annot-version=v1.0 ATGGCATTATCCAGTCAGGGTCTTCAGTCCTTCCTGGACCCACCCAGCCAACTCGAGCCGCGTGTCTTGCGGATCCGGCTGGCTGCTCCCGACCCGGAAC CCGACAATGCTGCCCGCTCTGGGTTCAGCTTCCTGCAATCCATGACCGAAAACGAAACCCTGGCCAAAGAAGTGTATGTCCCGCCAACCATGAAGCGCTC GGCGTCGTCGCTGAGCAAGCAGAGCCTGGAGATGTGCACGGAGAGCCTGGGGAGTGAGACCGGAACTGACGAGCACGGAAACAACAGCGACGATGAGATG ACGTTCATCTCCCCAGCGCCCGTTAGTAATAATTGGAGTGAGCGAGTTGAAGAGAGGAGGAGGACGAGGAGGAGTTCGAGGAGGAGGAATATGGTGTTGC CGCCTCCATTGACTTCAATCGGAAGTTCCGGCGGCGTGCAAATGAGGTCTCGCCGGGAAGACGGAAGGCTTGTGTTGACTGCGGTGAGTGTCTCTTCCTG CCGTGCTAATTTCCAGGCGGAGAGGTCCGATGGAAGGCTCAGGCTCCGGCTTACCACTGCCGCCGCGGATTGTCCCACCCAAGAAGAAGAGGAAGAAGAA GAAGAAGAAAAAGAAGCAGAGGAGAAAACAGAGGAGGAGGAAGAAGAGAAAGAGAAAGTGGAGATGGGAAGCAGGGGAGGAGGGAGGTGTATGGAAACAG GGGATGATAAAAACAGAGGATTGCTGAAACAATGGGAGCCATTGTGGGTGGCTACTTGA
AA sequence Show only first row Show all	>Lus10022036 pacid=23160290 polypeptide=Lus10022036 locus=Lus10022036.g ID=Lus10022036.BGIv1.0 annot-version=v1.0 MALSSQGLQSFLDPPSQLEPRVLRIRLAAPDPEPDNAARSGFSFLQSMTENETLAKEVYVPPTMKRSASSLSKQSLEMCTESLGSETGTDEHGNNSDDEM TFISPAPVSNNWSERVEERRRTRRSSRRRNMVLPPPLTSIGSSGGVQMRSRREDGRLVLTAVSVSSCRANFQAERSDGRLRLRLTTAAADCPTQEEEEEE EEEKEAEEKTEEEEEEKEKVEMGSRGGGRCMETGDDKNRGLLKQWEPLWVAT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03170		FAF2	FANTASTIC FOUR 2, Protein of u...		Lus10022036 [exp]	0	1
AT4G28850		ATXTH26, XTH26,...	xyloglucan endotransglucosylas...		Lus10012978 [exp]	2.8	0.8879
AT4G38400		ATEXPL2, ATHEXP...	EXPANSIN L2, expansin-like A2 ...		Lus10025116 [exp]	4.2	0.9014
AT5G58590		RANBP1	RAN binding protein 1 (.1)		Lus10035656 [exp]	6.6	0.8311
AT1G11770			FAD-binding Berberine family p...		Lus10023366 [exp]	10.4	0.8737
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Lus10002204 [exp]	16.7	0.7665
AT1G11080		SCPL31	serine carboxypeptidase-like 3...		Lus10011213 [exp]	18.2	0.8410
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10017693 [exp]	19.7	0.8235
AT4G23610			Late embryogenesis abundant (L...		Lus10039662 [exp]	20.9	0.8727
					Lus10040587 [exp]	22.9	0.8633
AT2G38600			HAD superfamily, subfamily III...		Lus10017060 [exp]	23.5	0.8445

Compare expression of checked genes

Lus10022036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.