Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02800 240 / 2e-77 unknown protein AT1G30050 108 / 1e-26 unknown protein AT5G01970 102 / 1e-24 unknown protein AT2G30530 101 / 3e-24 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000658 [exp] 355 / 2e-122 AT4G02800 266 / 1e-87 unknown protein Lus10014668 [exp] 348 / 1e-119 AT4G02800 262 / 1e-85 unknown protein Lus10042577 [exp] 186 / 9e-58 AT4G02800 109 / 1e-28 unknown protein Lus10031947 [exp] 104 / 2e-25 AT5G01970 263 / 1e-85 unknown protein Lus10034444 [exp] 105 / 3e-25 AT2G30530 268 / 3e-86 unknown protein Lus10019115 [exp] 104 / 5e-25 AT2G30530 267 / 5e-86 unknown protein Lus10035153 [exp] 100 / 2e-23 AT5G01970 264 / 8e-85 unknown protein Lus10035609 [exp] 94 / 1e-21 AT1G30050 187 / 5e-56 unknown protein Lus10003240 [exp] 89 / 3e-19 AT5G01990 610 / 0.0 Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G053100 [exp] 260 / 4e-85 AT4G02800 276 / 3e-91 unknown protein Potri.005G209400 [exp] 258 / 3e-84 AT4G02800 291 / 3e-97 unknown protein Potri.016G141300 [exp] 110 / 5e-27 AT5G01970 353 / 2e-119 unknown protein Potri.006G111900 [exp] 107 / 9e-26 AT5G01970 352 / 2e-118 unknown protein Potri.013G160100 [exp] 105 / 3e-25 AT2G30530 266 / 8e-85 unknown protein Potri.019G132300 [exp] 104 / 8e-25 AT2G30530 253 / 9e-80 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10022037 pacid=23160285 polypeptide=Lus10022037 locus=Lus10022037.g ID=Lus10022037.BGIv1.0 annot-version=v1.0 ATGGCTACCGCTTCCATCCAATCTTCTCCATCCACGCAGGATCTCCGATCGAAGATCTCATCTTCATCTTCTGGTCACTCCAGTCCGACATCAGACAAGC GCTTCTGGAGCACTCTCCGTGGCCGAATCGACTCCATTCTCGAAAAGCGTCACTACGTCAATGATGCAACCGTAGAGTCCAACGAGAATGCGGCAAAGAG GAGGAAAGAGGACGCCCTGCTTCTGCTCGGAGGATTTGATTCCATCTCCCACACCCTCTCTTCCCTCTCCAATAATCTGCACAATGCTCTTCAGGGAGCT AAATCTCTGGCGCAGCCGCCAACGTTGACAGAACTAATCCAGGCAAAGATCCAGAACGATGAGAAGGAAGCAGAAACAGAAAAAGATGCGGGGGTTAAGA TTGGGATCAAAAGAAAATTGGATTCTGATGAATCTGATACTAGCTCAGTTGGTGAAGGAAACAACTGTAACAAACTGAAGAAGGCCAGAAATCTGGCGGT TTCGATGGCGAAGAAGGCTGCTGTAATGGCCAGGGAGCTCAAGTCAATGAAGTCTGATATGTGCTTTGTGCAAGAGAGATGTTGTTTATTGGAGGATGAG AACAGAAGGCTAAGGGATGGATTTTCGTCCGGGATTCGACCCGAGGAAGACGACATGATGAGGCTGCAAATGGAGACACTGCTAGCCGAGAAATCGAGAC TGGCGAACGAGAATGCCAATCTGACTAGAGAAAATCAGACCCTTCACCAGCTTGTAGAGTACCACCAACTCACTTCTCAGGATCTCTCTGCGTCTTATGA GCAACTTGTTCGAGGAATGGGACTCGATTTTTCTTCTCCATATTGCTCGGAGGACAAGGAGAACAACAACGCAGATGACGAGGAAGATGATTACGAAGCA GGGGGGACAAGGAGAACATCAAACATTGCTGAATTCTCTACTTCCCTTGATAAGTACTTCAAGGAAGAGCAGTAA
AA sequence Show only first row Show all	>Lus10022037 pacid=23160285 polypeptide=Lus10022037 locus=Lus10022037.g ID=Lus10022037.BGIv1.0 annot-version=v1.0 MATASIQSSPSTQDLRSKISSSSSGHSSPTSDKRFWSTLRGRIDSILEKRHYVNDATVESNENAAKRRKEDALLLLGGFDSISHTLSSLSNNLHNALQGA KSLAQPPTLTELIQAKIQNDEKEAETEKDAGVKIGIKRKLDSDESDTSSVGEGNNCNKLKKARNLAVSMAKKAAVMARELKSMKSDMCFVQERCCLLEDE NRRLRDGFSSGIRPEEDDMMRLQMETLLAEKSRLANENANLTRENQTLHQLVEYHQLTSQDLSASYEQLVRGMGLDFSSPYCSEDKENNNADDEEDDYEA GGTRRTSNIAEFSTSLDKYFKEEQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02800			unknown protein		Lus10022037 [exp]	0	1
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10042527 [exp]	1.4	0.9776
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10011376 [exp]	2.8	0.9586
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Lus10021988 [exp]	4.5	0.9618
AT2G20635			ATP binding;protein kinases;pr...		Lus10017714 [exp]	7.3	0.9595
AT3G26050			TPX2 (targeting protein for Xk...		Lus10037054 [exp]	7.7	0.9563
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Lus10006436 [exp]	8.7	0.9216
AT5G42700	B3		AP2/B3-like transcriptional fa...		Lus10009764 [exp]	10.7	0.9285
					Lus10001684 [exp]	11.0	0.9549
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Lus10035943 [exp]	12.7	0.9405
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Lus10001909 [exp]	13.5	0.9326

Compare expression of checked genes

Lus10022037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.