Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63120 189 / 1e-60 CYCP1;1 cyclin p1;1 (.1) AT2G44740 172 / 4e-54 CYCP4;1 cyclin p4;1 (.1) AT3G05327 165 / 4e-51 Cyclin family protein (.1) AT5G61650 163 / 3e-50 CYCP4;2 CYCLIN P4;2 (.1) AT5G07450 158 / 3e-48 CYCP4;3 cyclin p4;3 (.1) AT2G45080 150 / 3e-45 CYCP3;1 cyclin p3;1 (.1) AT3G21870 149 / 1e-44 CYCP2;1 cyclin p2;1 (.1) AT3G60550 146 / 1e-43 CYCP3;2 cyclin p3;2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042582 [exp] 427 / 2e-154 AT3G63120 191 / 2e-61 cyclin p1;1 (.1) Lus10029933 [exp] 184 / 1e-58 AT3G05327 172 / 3e-54 Cyclin family protein (.1) Lus10004475 [exp] 183 / 3e-58 AT3G05327 171 / 1e-53 Cyclin family protein (.1) Lus10032505 [exp] 166 / 5e-51 AT2G44740 228 / 7e-76 cyclin p4;1 (.1) Lus10043003 [exp] 164 / 2e-50 AT2G44740 227 / 2e-75 cyclin p4;1 (.1) Lus10039697 [exp] 160 / 7e-49 AT3G21870 236 / 3e-79 cyclin p2;1 (.1) Lus10042873 [exp] 159 / 2e-48 AT3G60550 300 / 8e-104 cyclin p3;2 (.1) Lus10027148 [exp] 159 / 5e-48 AT3G21870 233 / 6e-77 cyclin p2;1 (.1) Lus10028174 [exp] 148 / 1e-44 AT2G45080 249 / 1e-84 cyclin p3;1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052800 [exp] 317 / 3e-110 AT3G63120 219 / 1e-71 cyclin p1;1 (.1) Potri.005G209800 [exp] 311 / 1e-108 AT3G63120 223 / 7e-74 cyclin p1;1 (.1) Potri.013G023000 [exp] 206 / 2e-67 AT3G05327 194 / 4e-63 Cyclin family protein (.1) Potri.005G033600 [exp] 201 / 1e-65 AT3G05327 184 / 5e-59 Cyclin family protein (.1) Potri.007G121500 [exp] 177 / 7e-56 AT3G21870 228 / 5e-76 cyclin p2;1 (.1) Potri.014G050400 [exp] 176 / 2e-55 AT2G44740 285 / 8e-99 cyclin p4;1 (.1) Potri.015G112140 [exp] 173 / 1e-54 AT2G44740 274 / 1e-94 cyclin p4;1 (.1) Potri.012G114600 [exp] 172 / 7e-54 AT2G44740 277 / 2e-95 cyclin p4;1 (.1) Potri.002G143400 [exp] 152 / 3e-46 AT2G45080 324 / 1e-113 cyclin p3;1 (.1) Potri.014G066400 [exp] 148 / 2e-44 AT3G60550 343 / 3e-121 cyclin p3;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [flax] [poplar] Cyclin PF08613 [flax] [poplar] Cyclin Cyclin
Representative CDS sequence Show only first row Show all	>Lus10022038 pacid=23160294 polypeptide=Lus10022038 locus=Lus10022038.g ID=Lus10022038.BGIv1.0 annot-version=v1.0 ATGGGAACTTTGCCAACTGATACCGGTGAGTGTCTTCAGGACTCGAATGTATACGTATCCTTGGGGCTCAAGGAAGCCGGAAAAGGATCATCAGCAAGTA AATCTCCAAGAGTTTTAGCGCTCGTTTCCTCTCTTCTTGAGAGATTGGTGCAAACAAATGAGTTACTAGTGGAGACGAACGAGATCAAAGATGTTGCTAC TGTTTTCCATGGGTTAAGAGCACCAGCAGTAAGCATTCGCCAGTACGTTGATCGCATCTTCAAGTACTCTTGCTGCAGCCCTTCCTGCTTTGTTGTCGCA CAGATATACCTAGACCGGTTTATAACGCAGACCGATGTCCACTTGACCTCTCTCAACGTCCACCGCATCCTCATAACCAGCGTCATGCTTGCTGCTAAGT TCGTCGATGATGCGTTTTTCAACAATGCATACTATGCTAGAGTTGGGGGGATAAGCACTGGGGAGTTGAACAAGTTGGAGATGAAGTTTTTGTTCAGTAT AGATTTCAGACTTCAGGTAAATACCAGCACATTCGGGAGATACTGCTGTAACTTGGAAAGAGAAGCTGCTACGGACGGACTCCATCAGATTGAACGGTCC ATTCAAGCTTGTAGAATCAAAGAAACTTGGTCGAATAATGAAGATTCGAGCACTTGTGCTGCTCCTGCAATTGCAAGATGA
AA sequence Show only first row Show all	>Lus10022038 pacid=23160294 polypeptide=Lus10022038 locus=Lus10022038.g ID=Lus10022038.BGIv1.0 annot-version=v1.0 MGTLPTDTGECLQDSNVYVSLGLKEAGKGSSASKSPRVLALVSSLLERLVQTNELLVETNEIKDVATVFHGLRAPAVSIRQYVDRIFKYSCCSPSCFVVA QIYLDRFITQTDVHLTSLNVHRILITSVMLAAKFVDDAFFNNAYYARVGGISTGELNKLEMKFLFSIDFRLQVNTSTFGRYCCNLEREAATDGLHQIERS IQACRIKETWSNNEDSSTCAAPAIAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10022038 [exp]	0	1
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	3.7	0.7994
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10019786 [exp]	7.7	0.7525
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	7.9	0.7805
AT5G40250			RING/U-box superfamily protein...		Lus10014526 [exp]	9.8	0.7567
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10039547 [exp]	11.2	0.6921
AT4G12010			Disease resistance protein (TI...		Lus10029810 [exp]	12.6	0.6316
AT5G23550			Got1/Sft2-like vescicle transp...		Lus10029537 [exp]	17.5	0.7344
AT1G76240			Arabidopsis protein of unknown...		Lus10012275 [exp]	19.4	0.7526
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	21.2	0.7580
AT5G02440			unknown protein		Lus10016560 [exp]	21.7	0.6556

Compare expression of checked genes

Lus10022038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.