Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19330 808 / 0 ARIA ARM repeat protein interacting with ABF2 (.1.2) AT5G13060 707 / 0 ABAP1 ARMADILLO BTB protein 1 (.1) AT3G06190 81 / 6e-16 ATBPM2 BTB-POZ and MATH domain 2 (.1.2) AT3G43700 76 / 4e-14 ATBPM6 BTB-POZ and MATH domain 6 (.1) AT5G19000 73 / 2e-13 ATBPM1 BTB-POZ and MATH domain 1 (.1.2) AT3G03740 71 / 1e-12 ATBPM4 BTB-POZ and MATH domain 4 (.1) AT2G39760 66 / 4e-11 ATBPM3 BTB/POZ/MATH-domains containing protein (.1.2) AT3G56230 62 / 4e-10 BTB/POZ domain-containing protein (.1) AT5G58680 62 / 7e-10 ARM repeat superfamily protein (.1) AT1G23030 62 / 1e-09 PUB11 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042583 [exp] 1273 / 0 AT5G19330 822 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10010527 [exp] 780 / 0 AT5G19330 1103 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10034070 [exp] 773 / 0 AT5G19330 1092 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Lus10041235 [exp] 78 / 7e-16 AT3G06190 339 / 8e-117 BTB-POZ and MATH domain 2 (.1.2) Lus10008421 [exp] 79 / 4e-15 AT3G03740 599 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10003365 [exp] 79 / 6e-15 AT3G03740 601 / 0.0 BTB-POZ and MATH domain 4 (.1) Lus10021946 [exp] 77 / 1e-14 AT3G06190 620 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Lus10027086 [exp] 75 / 1e-13 AT2G43940 163 / 5e-46 HARMLESS TO OZONE LAYER 3, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10040267 [exp] 67 / 3e-11 AT2G39760 597 / 0.0 BTB/POZ/MATH-domains containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210000 [exp] 858 / 0 AT5G19330 977 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.002G052700 [exp] 842 / 0 AT5G19330 994 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.008G150100 [exp] 806 / 0 AT5G19330 1045 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.010G090900 [exp] 693 / 0 AT5G19330 961 / 0.0 ARM repeat protein interacting with ABF2 (.1.2) Potri.001G184200 [exp] 85 / 6e-18 AT3G03740 342 / 1e-116 BTB-POZ and MATH domain 4 (.1) Potri.009G156500 [exp] 84 / 4e-17 AT3G03740 580 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.004G194200 [exp] 84 / 8e-17 AT3G03740 573 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.010G029500 [exp] 76 / 3e-14 AT3G06190 580 / 0.0 BTB-POZ and MATH domain 2 (.1.2) Potri.019G039500 [exp] 76 / 3e-14 AT3G03740 618 / 0.0 BTB-POZ and MATH domain 4 (.1) Potri.008G200700 [exp] 70 / 2e-12 AT3G06190 582 / 0.0 BTB-POZ and MATH domain 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0033 [flax] [poplar] POZ PF00651 [flax] [poplar] BTB BTB/POZ domain
Representative CDS sequence Show only first row Show all	>Lus10022039 pacid=23160308 polypeptide=Lus10022039 locus=Lus10022039.g ID=Lus10022039.BGIv1.0 annot-version=v1.0 ATGCAACGTCAATCAGCTTCCACCACCAGAAGGATCCTGAAGCGGAAGCTGGAGCAGGAGTTCGTCGAAGAAGATAACATAGATGAAAAGGTTCCGAAGG TTGAAGTAGCTGAATCCGACGACACAGTCGCTGAGGAGGTGGATACCAGAAGTCAGATTGCAGCTCAAGTCAGAGTACTGCACTCCTCTTTCTCTCCTCG TCAAGCCGATCGTGAATCGGCTAAGCTGGCTGCTCAGTTCATTTCCCAGCTGGCCAAGGATGAGGATTTCATTGATAATATTGTGGATTGTGGCGTTATT CCTGCATTGATTAAGCATCTTCAGACGCCACTTGATGATGGGAGCCGCTATGACGATAAGAAGGCAGATCTGATTCAGCTTGAGGTGGAGAAGGCCTGCG CGTTTGGTCTTGCGCTGATTGCCATACAGCCACAGTATCAACAAGTCATAGTAGATGCTGGAGCACTACCACATCTTGTATCTCTGCTGAAGAGACACAA AACTCATGGCAGCTCTCGAGTTGCCACTGGTGTTATCAGGAAAGCAGCTGATGCAATCACAAACCTAGCTCATGAGAACAGCTCAATCAAAACACTTGTT AGGATGGAAGGCGGCAGGCCTCCTCTTGTAGAGTTGCTTGATTCTGTTGAGCCAAAAATTGTGGAACTCAATGCCTTGGATACCCTTATATTAATGCTCC AGTCAGAAGATCCTACCATACATTTTGAAGCGGTTGGTGTGATTGGAAATCTTGTGCATTCGTCCCCACACATTAAGCAAATGGTTCTTCTTTCTGGGGC CTTACAACCTGTCATTTGTTTACTTCGTTCAACTTGTTCAGAGAGCCAAAGAGAAGCAGCTTTGCTATTAGGTCAATTTTCTACTACCGATTCTGAGTGC AAGGTGCACATAGGTCAGAGAGGAGCAATTCCACCATTGATTGATATGCTTGATTCCTCAGATGTTCAGCTTAAGGAAATGTCGGCCTTTGCCCTTGGGA GGTTGGCTCAGGAAACTCACAACCAAGCCGGTATAGTGCATCACGGTGGTATAATACCACTATTAAAGCTTCTTGGGTCGAACAATGGATCTTTGCAGCA TAATGCTGCTTTTACTATATTCGGTCTTGCAGAGAATGAGGATAACATTGCTAATCTCATCAAGGTTGGCGCAGTTCAGAAACTCCAAGATGGTGATTAC AAGTTTCAACCTACGCAGGAATGTGTTGAGAAAACGTTAAAAAGAATAGAAGAAAATATCCACGGACGGGTATTGAAGCGTCTCATATATCTGATGCGAT CGGGAGAGAAAACCGAGCAGAGACAGATTGCATTGGCTCTTGCACATCTTTGTGCACCTAATGACCGTAAAGCCATTTTTCTCGATAACAATGGTAAAGC TCTTTACTGCCTTTCTCCGTATAGAAGCTTCCTTCCTTCTGGAATTCTCGTTCGGTTCTCATTCACGTTGTGGTTCGTTCCAGCAGGATTAGAGACTCTG TTGGAACTTCTCGAGTCGGGAAACCTGAAGCAGCGAAATGAGGGAGCTGAGGCTTTGTATAAGTTGGCTACCAAGGCTACTACTGTCTTTCCCATTACTG CAGCTCCTTTATCACCAACCCCACAGGTATATCTGGGCGAACAGTATGTAAACAACTCAACATTATCTGATGTAACCTTTTTAGTTGAAGGCAAGCGATT CTATGCTCACAGGATTTGCCTCCTCGCATCATCTGATACATTCCGTGCAATGTTTGATGGGGGTTACAAGGAGAAGGAAGCTAAAGATGTGGTGATCCCA AACATAAGATGGGAAGTCTTCGAGTTGATGATGCGGTTCATATACACCGGATCGGTTGATTTTAACATAAAAATCGCCAACGAACTACTGGTAGCTGCAG ATCAGTATTTCTTGGATGGTCTAAAGCGACTCTGTGAGTACGCTATTGCTCAGGACATCTCAGTAGAAAATATCAGTCAGATGTACGAGCTATCGGAAAG CTTTTGTGCCATGACCTTACGAGAAGCGTGCATACTCTTCATATTTCAGAACTTTGATAAACTGAGCTCCAGGCCATGGTGTTCTCGTTTTATTAAGGGA GTTTTGCCGGAGATTCGTTCTTACTTTGCCAGAGCACTGGTCATCACCAACCCTCTCCAAGCTTTGATGTGA
AA sequence Show only first row Show all	>Lus10022039 pacid=23160308 polypeptide=Lus10022039 locus=Lus10022039.g ID=Lus10022039.BGIv1.0 annot-version=v1.0 MQRQSASTTRRILKRKLEQEFVEEDNIDEKVPKVEVAESDDTVAEEVDTRSQIAAQVRVLHSSFSPRQADRESAKLAAQFISQLAKDEDFIDNIVDCGVI PALIKHLQTPLDDGSRYDDKKADLIQLEVEKACAFGLALIAIQPQYQQVIVDAGALPHLVSLLKRHKTHGSSRVATGVIRKAADAITNLAHENSSIKTLV RMEGGRPPLVELLDSVEPKIVELNALDTLILMLQSEDPTIHFEAVGVIGNLVHSSPHIKQMVLLSGALQPVICLLRSTCSESQREAALLLGQFSTTDSEC KVHIGQRGAIPPLIDMLDSSDVQLKEMSAFALGRLAQETHNQAGIVHHGGIIPLLKLLGSNNGSLQHNAAFTIFGLAENEDNIANLIKVGAVQKLQDGDY KFQPTQECVEKTLKRIEENIHGRVLKRLIYLMRSGEKTEQRQIALALAHLCAPNDRKAIFLDNNGKALYCLSPYRSFLPSGILVRFSFTLWFVPAGLETL LELLESGNLKQRNEGAEALYKLATKATTVFPITAAPLSPTPQVYLGEQYVNNSTLSDVTFLVEGKRFYAHRICLLASSDTFRAMFDGGYKEKEAKDVVIP NIRWEVFELMMRFIYTGSVDFNIKIANELLVAADQYFLDGLKRLCEYAIAQDISVENISQMYELSESFCAMTLREACILFIFQNFDKLSSRPWCSRFIKG VLPEIRSYFARALVITNPLQALM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13060		ABAP1	ARMADILLO BTB protein 1 (.1)		Lus10022039 [exp]	0	1
AT5G19330		ARIA	ARM repeat protein interacting...		Lus10042583 [exp]	1.7	0.9745
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10021153 [exp]	1.7	0.9830
AT3G14740			RING/FYVE/PHD zinc finger supe...		Lus10038142 [exp]	2.4	0.9782
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Lus10028795 [exp]	2.6	0.9668
AT1G67320		EMB2813	EMBRYO DEFECTIVE 2813, DNA pri...		Lus10000602 [exp]	3.2	0.9647
AT5G08020		ATRPA70B	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10040517 [exp]	4.5	0.9735
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Lus10037184 [exp]	4.9	0.9567
AT3G61740		SDG14, ATX3	SET domain protein 14 (.1.2)		Lus10030262 [exp]	4.9	0.9660
AT4G30860		SDG4, ASHR3	ASH1-related 3, SET domain gro...		Lus10006888 [exp]	5.7	0.9616
AT3G19210		ATRAD54, CHR25	homolog of RAD54 (.1.2)		Lus10019866 [exp]	6.0	0.9650

Compare expression of checked genes

Lus10022039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.