Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63200 400 / 3e-140 PLP9, PLAIIIB ,PLA IIIB PATATIN-like protein 9 (.1) AT2G39220 224 / 7e-70 PLP6, PLAIIB ,PLA IIB PATATIN-like protein 6 (.1) AT3G54950 209 / 2e-64 pPLAIIIbeta, PLP7, PLAIIIA ,PLA IIIA patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) AT4G29800 194 / 3e-58 PLP8, PLAIVD ,PLA IVD PATATIN-like protein 8 (.1.2) AT4G37060 72 / 4e-14 AtPLAIVB, PLP5, PLAIVB ,PLA IVB phospholipase A IVB, PATATIN-like protein 5 (.1.2) AT5G43590 62 / 9e-11 Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1) AT4G37070 61 / 3e-10 AtPLAIVA, PLP1, PLAIVA ,PLA IVA phospholipase A IVA, Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein (.1.2.3.4) AT4G37050 58 / 3e-09 PLAIII{beta}, AtPLAIVC, PLP4, PLAV ,PLA V patatin-related phospholipase III beta, phospholipase A IVC, PATATIN-like protein 4 (.1) AT2G26560 54 / 6e-08 PLP2, PLAIIA, PLA2A PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042584 [exp] 301 / 1e-104 AT3G63200 239 / 3e-79 PATATIN-like protein 9 (.1) Lus10040394 [exp] 228 / 2e-71 AT2G39220 642 / 0.0 PATATIN-like protein 6 (.1) Lus10041402 [exp] 216 / 3e-67 AT3G54950 637 / 0.0 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10036526 [exp] 214 / 3e-66 AT2G39220 640 / 0.0 PATATIN-like protein 6 (.1) Lus10023512 [exp] 194 / 4e-58 AT4G29800 523 / 0.0 PATATIN-like protein 8 (.1.2) Lus10038349 [exp] 163 / 4e-47 AT3G54950 354 / 2e-118 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Lus10038350 [exp] 152 / 1e-44 AT2G39220 234 / 3e-74 PATATIN-like protein 6 (.1) Lus10036212 [exp] 122 / 2e-32 AT2G39220 170 / 2e-48 PATATIN-like protein 6 (.1) Lus10024533 [exp] 71 / 8e-16 AT2G39220 87 / 2e-22 PATATIN-like protein 6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210100 [exp] 413 / 3e-145 AT3G63200 560 / 0.0 PATATIN-like protein 9 (.1) Potri.002G052600 [exp] 404 / 1e-141 AT3G63200 511 / 0.0 PATATIN-like protein 9 (.1) Potri.008G040500 [exp] 228 / 8e-72 AT2G39220 595 / 0.0 PATATIN-like protein 6 (.1) Potri.010G221700 [exp] 223 / 7e-70 AT2G39220 586 / 0.0 PATATIN-like protein 6 (.1) Potri.012G123900 [exp] 190 / 3e-57 AT3G54950 380 / 1e-128 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.015G122700 [exp] 185 / 2e-55 AT3G54950 375 / 2e-126 patatin-related phospholipase IIIbeta, PATATIN-LIKE PROTEIN 7, patatin-like protein 6 (.1) Potri.019G014386 [exp] 87 / 4e-19 AT2G26560 230 / 2e-71 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014382 [exp] 87 / 4e-19 AT2G26560 230 / 2e-71 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014405 [exp] 83 / 1e-17 AT2G26560 275 / 7e-89 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1) Potri.019G014384 [exp] 74 / 8e-15 AT2G26560 274 / 2e-88 PATATIN-LIKE PROTEIN 2, phospholipase A 2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0323 [flax] [poplar] Patatin PF01734 [flax] [poplar] Patatin Patatin-like phospholipase
Representative CDS sequence Show only first row Show all	>Lus10022040 pacid=23160314 polypeptide=Lus10022040 locus=Lus10022040.g ID=Lus10022040.BGIv1.0 annot-version=v1.0 ATGCCGCCAGGAAGACCAGAGGTTGCTTTCCTTGCCGACAGGAACTCCGAGCTCTTCAAACCGAAGTGCCTCTCAGCTGTGCTCTCCGGTAGCCGCCGCA GATTCTCCGGCAGGAGTATGGACAAGGTGCTTAAGGAAGCGTTCAAGCGAGAGGATGGAAGGCTCTTGACTCTCAAGGACGCGTGTAAGCCTCTTCTCGT CCCTTGCTTTGATCTCAAGAGCGGCGCTCCTTTTGTCTTCTCCAGAGCCGACGCTTCTGAGTCGCCGAGTTTCGACTTCGAACTCTGGCAAGTTTGCCGA GCCACAGCCGCTACTCCCGGCCTGTTCAACCCGTTCGACCTCAAATCCGTCGACGGTAAGACATGTTGCTCCGCTATCGATGGAGGATTGGTGATGAACA ACCCGACGGCAGCCGCTGTCACTCACGTCCTCCACAACAAACGCGATTTCCCGTCGGTGAACGGCGTCGAGGATTTGCTTGTCCTTTCTCTAGGCAACGG CCCTTCAGCCGGTGGGAAACTTTTCCGCCGCCGCAACGGCGAGTGCTCCGCTTCGTCGATCGTCAACATCGCGCTCGACGGCGTCTCGGAAACAGTCGAC CAAATGTTGGGGAATGATTTCTGCTGGAACCGCACGGACTACATCAGAATCCAGGCAAATGGGTTGACGAGTGGGAAAACGGTGGGATCAAGGGAAGAAG TGTTAACGGAGAGAGGAGTGGAGTCACTTCCGTTTGGCGGGAAGCGGTTACTAGCGGAGACAAACGGGGAAAGAATCGAGAAGTTAGCGCAACGTCTTGT TGATTCTGGGAGGAGTAGCTTGCCTCCGAGTCCTTGCAAGGATTCGGCCGTCGTTAGCCCACTCGCTAACGGCCGTTAG
AA sequence Show only first row Show all	>Lus10022040 pacid=23160314 polypeptide=Lus10022040 locus=Lus10022040.g ID=Lus10022040.BGIv1.0 annot-version=v1.0 MPPGRPEVAFLADRNSELFKPKCLSAVLSGSRRRFSGRSMDKVLKEAFKREDGRLLTLKDACKPLLVPCFDLKSGAPFVFSRADASESPSFDFELWQVCR ATAATPGLFNPFDLKSVDGKTCCSAIDGGLVMNNPTAAAVTHVLHNKRDFPSVNGVEDLLVLSLGNGPSAGGKLFRRRNGECSASSIVNIALDGVSETVD QMLGNDFCWNRTDYIRIQANGLTSGKTVGSREEVLTERGVESLPFGGKRLLAETNGERIEKLAQRLVDSGRSSLPPSPCKDSAVVSPLANGR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Lus10022040 [exp]	0	1
AT1G08460		HDA8, HDA08, AT...	histone deacetylase 8 (.1)		Lus10001850 [exp]	2.0	0.9603
AT3G63250		HMT-2, ATHMT-2 ...	HOMOCYSTEINE METHYLTRANSFERASE...		Lus10006901 [exp]	2.4	0.9566
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10038233 [exp]	3.6	0.9610
AT3G54250			GHMP kinase family protein (.1...		Lus10034147 [exp]	6.6	0.9592
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032254 [exp]	8.7	0.9598
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Lus10028242 [exp]	8.8	0.9559
AT1G21750		ATPDI5, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10018156 [exp]	11.5	0.9513
AT5G48490			Bifunctional inhibitor/lipid-t...		Lus10025866 [exp]	11.6	0.9500
					Lus10032253 [exp]	12.4	0.9567
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007385 [exp]	12.7	0.9540

Compare expression of checked genes

Lus10022040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.