Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63190 263 / 1e-87 HFP108, AtcpRRF, RRF "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1) AT3G01800 90 / 7e-21 Ribosome recycling factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042587 [exp] 439 / 4e-157 AT3G63190 315 / 2e-108 "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1) Lus10035226 [exp] 85 / 8e-19 AT3G01800 367 / 5e-129 Ribosome recycling factor (.1) Lus10032060 [exp] 83 / 4e-18 AT3G01800 372 / 4e-131 Ribosome recycling factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052400 [exp] 278 / 2e-93 AT3G63190 308 / 2e-105 "ribosome recycling factor, chloroplast precursor", HIGH CHLOROPHYLL FLUORESCENCE AND PALE GREEN MUTANT 108, Arabidopsis thaliana chloroplast ribosome recycling factor, ribosome recycling factor, chloroplast precursor (.1) Potri.001G333700 [exp] 86 / 2e-19 AT3G01800 316 / 3e-109 Ribosome recycling factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01765 [flax] [poplar] RRF Ribosome recycling factor
Representative CDS sequence Show only first row Show all	>Lus10022041 pacid=23160306 polypeptide=Lus10022041 locus=Lus10022041.g ID=Lus10022041.BGIv1.0 annot-version=v1.0 ATGGCGTCTCCCTTCTCCCTTCGCTCTGTCCTTCATGCCAACCACATCAGCTCTCTCTCCACTCCAGTTTCTCCGGCAATGTGTAACATGTGTAGTGTAT CGGCAGGCTTGTGCCACGCCCCGCTGCATCATTCGAAGTCCTACACCACCACTGCTTCTCTCGGGTTCTGTAGCTCCCCTGCTAGCACGGGGAGCTGCGC TGCAAAAGTTTGGGGGAAGCCAATTGTTCCAAAGCGATTGTCGCAGAAGATTGACCGATTTGTGAGGTTCGCAACTATGGAAGAAATTGAAGCTGAGAAA ACCTCCATTGAACAGGATGCTAAATCAAGGATGGAAAAGACAATTGAGACACTCCGAAACAATTTCAACTCTGTAAGGACGGGCAGAGCTAACCCTGCCA TGTTGGATAAAATTCAGGTGGAGTACTATGGAAGTCCAGTATCACTGAAATCCATCGCTCAGATCAGTTCGCCTGATGCTAGCTCTCTCCTGATTAACCC ATACGACAAGTCCAGCTTGAAGATCATCGAGAAGGCCATCGTTAATTCCGATCTCGGTGTGACACCAAACAATGATGGAGAAGTTATCCGACTCTCTGTT CCTCAGCTGACATCTGAAAGAAGGAAGGTAGCTTTGAGGAATGTAAGAAGGGATGCACTGAAAGCATATGAGAAGCTTGAGAAGGAGAAAAAGCTGTCGG AAGATAACGTGAAGGACTTGTCCGGAGGAATTCAGAAACTGATAGATGAATACACAAAGAAGGTAGATAGCCTTTTCAAACAAAAAGAAAAGCGACTGAA GAAGTTTGGATTTTTGTTATTAGCTGTACAGCAGGAGCGTGACGAAGAACCTGTTGCTGGGAAATTTCTCATTGTCAGAACTGGGTTTTTTACTTAA
AA sequence Show only first row Show all	>Lus10022041 pacid=23160306 polypeptide=Lus10022041 locus=Lus10022041.g ID=Lus10022041.BGIv1.0 annot-version=v1.0 MASPFSLRSVLHANHISSLSTPVSPAMCNMCSVSAGLCHAPLHHSKSYTTTASLGFCSSPASTGSCAAKVWGKPIVPKRLSQKIDRFVRFATMEEIEAEK TSIEQDAKSRMEKTIETLRNNFNSVRTGRANPAMLDKIQVEYYGSPVSLKSIAQISSPDASSLLINPYDKSSLKIIEKAIVNSDLGVTPNNDGEVIRLSV PQLTSERRKVALRNVRRDALKAYEKLEKEKKLSEDNVKDLSGGIQKLIDEYTKKVDSLFKQKEKRLKKFGFLLLAVQQERDEEPVAGKFLIVRTGFFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10022041 [exp]	0	1
AT4G38160		PDE191	pigment defective 191, Mitocho...		Lus10013854 [exp]	2.6	0.9679
AT4G09010		TL29, APX4	thylakoid lumen 29, ascorbate ...		Lus10020942 [exp]	3.5	0.9619
AT4G20760			NAD(P)-binding Rossmann-fold s...		Lus10038343 [exp]	4.1	0.9559
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10041469 [exp]	4.6	0.9659
AT2G35130			Tetratricopeptide repeat (TPR)...		Lus10017134 [exp]	4.8	0.9540
AT4G09040			RNA-binding (RRM/RBD/RNP motif...		Lus10008721 [exp]	5.3	0.9582
AT5G11450		PPD5	PsbP domain protein 5, Mog1/Ps...		Lus10001861 [exp]	6.0	0.9667
AT3G63190		HFP108, AtcpRRF...	"ribosome recycling factor, ch...		Lus10042587 [exp]	6.7	0.9635
AT5G40950		RPL27	ribosomal protein large subuni...		Lus10041553 [exp]	9.4	0.9650
AT1G64510			Translation elongation factor...		Lus10023054 [exp]	10.6	0.9608

Compare expression of checked genes

Lus10022041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.