Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10270 682 / 0 CDKC;1 cyclin-dependent kinase C;1 (.1) AT5G64960 656 / 0 CDKC2, CDKC;2 Cyclin-dependent kinase C;2, cyclin dependent kinase group C2 (.1.2) AT1G71530 356 / 2e-112 Protein kinase superfamily protein (.1.2) AT1G53050 360 / 4e-111 Protein kinase superfamily protein (.1) AT5G50860 357 / 4e-111 Protein kinase superfamily protein (.1) AT1G03740 355 / 3e-109 Protein kinase superfamily protein (.1.2) AT5G44290 353 / 6e-109 Protein kinase superfamily protein (.1.2.3.4) AT1G33770 344 / 5e-106 Protein kinase superfamily protein (.1) AT1G74330 341 / 4e-104 Protein kinase superfamily protein (.1.2) AT5G39420 337 / 4e-103 CDC2CAT CDC2C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042588 [exp] 800 / 0 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036106 [exp] 752 / 0 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10026790 [exp] 739 / 0 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10039836 [exp] 358 / 3e-111 AT1G53050 633 / 0.0 Protein kinase superfamily protein (.1) Lus10001715 [exp] 356 / 6e-111 AT1G54610 804 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10035892 [exp] 356 / 6e-111 AT1G53050 827 / 0.0 Protein kinase superfamily protein (.1) Lus10012805 [exp] 355 / 2e-110 AT1G54610 780 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10025773 [exp] 357 / 7e-110 AT1G53050 939 / 0.0 Protein kinase superfamily protein (.1) Lus10004144 [exp] 357 / 1e-109 AT1G54610 803 / 0.0 Protein kinase superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G024600 [exp] 761 / 0 AT5G10270 712 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.012G003700 [exp] 722 / 0 AT5G10270 661 / 0.0 cyclin-dependent kinase C;1 (.1) Potri.015G103300 [exp] 367 / 6e-115 AT5G50860 716 / 0.0 Protein kinase superfamily protein (.1) Potri.012G103900 [exp] 363 / 2e-113 AT5G50860 709 / 0.0 Protein kinase superfamily protein (.1) Potri.013G032200 [exp] 360 / 2e-112 AT1G54610 787 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.011G119400 [exp] 363 / 7e-112 AT1G53050 1011 / 0.0 Protein kinase superfamily protein (.1) Potri.008G204400 [exp] 357 / 8e-112 AT1G54610 719 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.013G100100 [exp] 358 / 7e-111 AT1G71530 722 / 0.0 Protein kinase superfamily protein (.1.2) Potri.019G073100 [exp] 358 / 7e-111 AT1G71530 740 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G399700 [exp] 358 / 3e-110 AT1G53050 1006 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10022043 pacid=23160229 polypeptide=Lus10022043 locus=Lus10022043.g ID=Lus10022043.BGIv1.0 annot-version=v1.0 ATGTCGATTGCAGCCACTGGCCAGCTCAACCTGACCGAGTATTCAACATGGGGATCCCGGACCGTTGATAAGTTTGAGAAGCTGGAACAAATTGGCGAGG GAACTTACGGTCAAGTTTACATGGCTCGTGAGATAGCGACAGGAGAAATAGTCGCTCTTAAGAAGATAAGAATGGACAACGAGAGAGAAGGATTTCCGAT AACTGCCATTCGTGAAATCAAAATTCTAAAGAAGCTTCATCATGATAATGTAATTCAGTTAAAAGAGATAGTGACATCTCCAGATGGTAATAAGTATAAA GGTGGTATCTACATGGTCTTTGAGTATATGGATCACGATTTAACTGGACTTTCTGATCGTCCAGGAATGAGATTTTCCGTTCCTCAAATTAAGTGCTACA TGAAGCAGCTATTAACTGGGCTTCATTATTGCCACGTAAATCAAGTACTACATCGTGATATCAAAGGTTCTAATCTTCTTATAGATAACGAGGGCAATCT AAAGCTTGCTGATTTTGGGCTTGCTCGATCATTCTCGAATGATCATAATGCAAATCTTACAAACCGCGTTATTACTTTATGGTACAGACCACCGGAGTTG CTCCTTGGGGCAACCAAGTATGGTCCAGCTGTTGATATGTGGTCTGTTGGCTGTATCTTTGCTGAGCTTCTCCACGGGAAGCCTATTTTCCCTGGAAAAG ATGAGCCGGAACAACTAAACAAGATTTTCGAGCTTTGTGGGGCACCTGATGAGGTTATCTGGCCCGGTGTTTCCAAGATTCCTTGGTATAACAACTTCAA GCCTTCAAGGCCATTGAAGAGACGGCTAAGGGAGGTCTTCAGACATTTCGATCGTCATGCTTTGGAGTTGCTGGAGAAAATGCTTACTCTTGATCCTGCT CAGAGAATATCTGCCAAAGATGCGCTGGACGCTGAGTATTTCTGGACGGATCCGTTACCTTGTGATCCCAAGACTTTGCCGAAATACGAATCCTCTCACG AGTTCCAGACGAAGAAGAAGAGGCAGCAGCAGAGACAGCACGAAGAGAATGCGAAACGTCAGAAGCTACAGCATCCGCAACCACACAGCCGCCTTCCTCC GATTCAGCAATCCGGGCAGGCACATGCTCAGATGAGGTCGGGTCCTAATCACGGCTCGCAACCTCCAGTACCGGCAGGAGCAGGCCACCATTATGGCAAG CTGCGTGGACCGACAGGCGGGCCGGGCAGGGATCCTCAAACCGGAGCCAGTGGTGGATACAACCACCACCCGAATCGCCGCGGGGCCGAGAGGCGGGCGG GGGGGGGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCGTGAAGGGGGGTGGGGGGGGG GGTAA
AA sequence Show only first row Show all	>Lus10022043 pacid=23160229 polypeptide=Lus10022043 locus=Lus10022043.g ID=Lus10022043.BGIv1.0 annot-version=v1.0 MSIAATGQLNLTEYSTWGSRTVDKFEKLEQIGEGTYGQVYMAREIATGEIVALKKIRMDNEREGFPITAIREIKILKKLHHDNVIQLKEIVTSPDGNKYK GGIYMVFEYMDHDLTGLSDRPGMRFSVPQIKCYMKQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPEL LLGATKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVIWPGVSKIPWYNNFKPSRPLKRRLREVFRHFDRHALELLEKMLTLDPA QRISAKDALDAEYFWTDPLPCDPKTLPKYESSHEFQTKKKRQQQRQHEENAKRQKLQHPQPHSRLPPIQQSGQAHAQMRSGPNHGSQPPVPAGAGHHYGK LRGPTGGPGRDPQTGASGGYNHHPNRRGAERRAGGGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXREGGWGGG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Lus10022043 [exp]	0	1
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10033203 [exp]	2.2	0.9332
AT5G55610			unknown protein		Lus10004412 [exp]	4.2	0.9216
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Lus10016901 [exp]	5.0	0.9155
AT2G05790			O-Glycosyl hydrolases family 1...		Lus10015151 [exp]	5.3	0.9200
AT5G09995			unknown protein		Lus10016816 [exp]	7.7	0.9005
AT2G30200		EMB3147	EMBRYO DEFECTIVE 3147, catalyt...		Lus10026397 [exp]	9.9	0.9120
AT5G26360			TCP-1/cpn60 chaperonin family ...		Lus10034682 [exp]	11.4	0.9232
AT5G35910			Polynucleotidyl transferase, r...		Lus10039170 [exp]	12.2	0.8961
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Lus10010919 [exp]	14.4	0.9129
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Lus10014842 [exp]	15.2	0.8876

Compare expression of checked genes

Lus10022043 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.