Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63170 274 / 5e-92 Chalcone-flavanone isomerase family protein (.1) AT2G26310 115 / 2e-30 Chalcone-flavanone isomerase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042591 [exp] 470 / 3e-169 AT3G63170 274 / 5e-92 Chalcone-flavanone isomerase family protein (.1) Lus10022046 [exp] 431 / 1e-153 AT3G63170 296 / 1e-100 Chalcone-flavanone isomerase family protein (.1) Lus10042592 [exp] 429 / 6e-153 AT3G63170 298 / 2e-101 Chalcone-flavanone isomerase family protein (.1) Lus10032083 [exp] 140 / 3e-40 AT3G63170 140 / 3e-40 Chalcone-flavanone isomerase family protein (.1) Lus10014620 [exp] 102 / 3e-26 AT3G63170 112 / 3e-30 Chalcone-flavanone isomerase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G052200 [exp] 306 / 2e-104 AT3G63170 290 / 2e-98 Chalcone-flavanone isomerase family protein (.1) Potri.006G219600 [exp] 119 / 7e-31 AT2G26310 407 / 1e-140 Chalcone-flavanone isomerase family protein (.1.2.3) Potri.018G048500 [exp] 119 / 8e-31 AT2G26310 389 / 3e-133 Chalcone-flavanone isomerase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0560 [flax] [poplar] Chalcone-like PF02431 [flax] [poplar] Chalcone Chalcone-flavanone isomerase
Representative CDS sequence Show only first row Show all	>Lus10022045 pacid=23160244 polypeptide=Lus10022045 locus=Lus10022045.g ID=Lus10022045.BGIv1.0 annot-version=v1.0 ATGGTAGTGCTGCGATTTCCATCCTTGTTTCCACAGCAAAGTAACCAACCCAACGTTAGTTCGAAGGCAACGACCACCGCCTCTCACCCCTCCGCCGCAG CTGTCGTCGCCGTCGCCACCGGTGCCGCCACTTTCGCTGGCCTTGCCGCCGTGAATAACCTAAGGGACTGGAATTCCTCCGTCGTCGAAAATGCGCTTAA TTCGCTCTTCTCCCGCCACCGCTCCTCCCTACCGTGGGGCTCCCTCTCCCTCGTCGACTGCTCAGATTCCTACGTCGTCGAATCAAAGACCGGAGAGTCG TTCCCTAGCGTTATTTCTGGTAATCGGCAGCTTTTGGGCATTGGATTGAGGAGGAAGAGCCTGTTAGGTTTGAAGAACATCGATGTCTACGCATTTGGTG TGTATGCTGACAAGGAAGAAGTGCAGAAATGCCTGGACAAGAAACAAGCAACTCTTTCTGCCTCTGAACTCAAGCAAGAACTGCTTGAAGCGGACGTATG CTTGACGGTTAGGCTTCAGATACTGTACGGTAAGCTAAGCATTCACTCTGTACGAAATGCATTTGAGGATTCTGTTGGGAGAAGGCTGCAAAAGTTTGGG GGACTGGATGATAAAGAGGTTCTGCAACGGTTCACTTCTCTGTTCAAGGATGAATATAAAATACCCCGGGGATCTGTTATAGAACTGTCAAGGGAACGAG GCCATGTACTTCGCACAACAATTGAGGGGAAGGACATCGGCAGCATCGAGAGCAAGGTCTTGTGTCGGTCGATCCTTGATTTACATATTGGTGAAGATCC GTTTGACAGACAGGCCAAAGAAGAATTTGAGAGTAATTTGTCATCTCTCCTACACAAGTAG
AA sequence Show only first row Show all	>Lus10022045 pacid=23160244 polypeptide=Lus10022045 locus=Lus10022045.g ID=Lus10022045.BGIv1.0 annot-version=v1.0 MVVLRFPSLFPQQSNQPNVSSKATTTASHPSAAAVVAVATGAATFAGLAAVNNLRDWNSSVVENALNSLFSRHRSSLPWGSLSLVDCSDSYVVESKTGES FPSVISGNRQLLGIGLRRKSLLGLKNIDVYAFGVYADKEEVQKCLDKKQATLSASELKQELLEADVCLTVRLQILYGKLSIHSVRNAFEDSVGRRLQKFG GLDDKEVLQRFTSLFKDEYKIPRGSVIELSRERGHVLRTTIEGKDIGSIESKVLCRSILDLHIGEDPFDRQAKEEFESNLSSLLHK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63170			Chalcone-flavanone isomerase f...		Lus10022045 [exp]	0	1
AT4G28100			unknown protein		Lus10039742 [exp]	2.2	0.7706
AT4G36020		CSDP1	cold shock domain protein 1 (....		Lus10028449 [exp]	2.6	0.8227
AT1G65270			unknown protein		Lus10020224 [exp]	3.7	0.8208
AT3G52300		ATPQ	"ATP synthase D chain, mitocho...		Lus10023337 [exp]	5.2	0.7891
AT5G14230			unknown protein		Lus10022339 [exp]	9.9	0.7479
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Lus10021604 [exp]	10.4	0.7849
AT4G13270			Late embryogenesis abundant (L...		Lus10023631 [exp]	10.7	0.7507
AT1G29330		ATERD2, AERD2, ...	ARABIDOPSIS THALIANA ENDOPLASM...		Lus10007314 [exp]	14.0	0.7155
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Lus10019317 [exp]	20.2	0.7324
AT2G02050			NADH-ubiquinone oxidoreductase...		Lus10031932 [exp]	21.2	0.6879

Compare expression of checked genes

Lus10022045 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.