Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02780 785 / 0 ATCPS1, ABC33, GA1 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G79460 253 / 2e-72 ATKS1, ATKS, GA2 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G61120 152 / 7e-38 TPS4, GES, TPS04 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) AT2G24210 99 / 2e-21 AtTPS10 terpene synthase 10 (.1) AT4G16740 95 / 1e-20 ATTPS03 terpene synthase 03 (.1.2) AT3G25810 87 / 1e-17 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G16730 86 / 3e-17 AtTPS02 terpene synthase 02 (.1) AT5G23960 82 / 5e-16 ATTPS21 terpene synthase 21 (.1.2) AT3G25820 77 / 2e-14 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT3G25830 75 / 9e-14 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042593 [exp] 1479 / 0 AT4G02780 808 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006925 [exp] 1055 / 0 AT4G02780 759 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004323 [exp] 971 / 0 AT4G02780 733 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10006917 [exp] 317 / 3e-102 AT4G02780 210 / 3e-62 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10016598 [exp] 247 / 3e-70 AT1G79460 776 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10005399 [exp] 218 / 5e-60 AT1G79460 515 / 1e-172 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10024120 [exp] 217 / 2e-59 AT1G79460 522 / 3e-173 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10004906 [exp] 211 / 1e-57 AT1G79460 531 / 1e-178 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10012880 [exp] 206 / 5e-56 AT1G79460 677 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210300 [exp] 1051 / 0 AT4G02780 829 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.002G052100 [exp] 1031 / 0 AT4G02780 863 / 0.0 GA REQUIRING 1, CPP synthase, ARABIDOPSIS THALIANA ENT-COPALYL DIPHOSPHATE SYNTHETASE 1, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082700 [exp] 263 / 3e-76 AT1G79460 818 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.008G082400 [exp] 259 / 5e-75 AT1G79460 816 / 0.0 GA REQUIRING 2, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE 1, ARABIDOPSIS THALIANA ENT-KAURENE SYNTHASE, Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.004G037900 [exp] 224 / 6e-62 AT1G61120 782 / 0.0 TERPENE SYNTHASE 4, GERANYLLINALOOL SYNTHASE, terpene synthase 04 (.1) Potri.007G119700 [exp] 109 / 1e-24 AT4G16740 438 / 8e-147 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 108 / 4e-24 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.019G023008 [exp] 107 / 4e-24 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023014 [exp] 104 / 9e-24 AT4G16740 294 / 1e-96 terpene synthase 03 (.1.2) Potri.019G023006 [exp] 105 / 2e-23 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [flax] [poplar] Terpene_synth Terpene synthase, N-terminal domain CL0613 [flax] [poplar] Terp_synthase PF03936 [flax] [poplar] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Lus10022047 pacid=23160263 polypeptide=Lus10022047 locus=Lus10022047.g ID=Lus10022047.BGIv1.0 annot-version=v1.0 ATGGTTTCAGTCCGAATTGTCTGCCCATTGGCAGGATGCGCGTGGTTGAACAGTGCTACGAAAGATAAGAAGGTTCGGTCAGATGTCCGAGCCAGATGTG TGGTATCCAAATCTCGAACACAAGAATACGAAGCTGACGTGTTTCAACAAAATGGTTCGCCAGTGATAAAGTGGCACGACATTGTGGAAGATGACATTGA ACAGGAAACTCTCAAGGTGTCGGTATCGAGTGAGATAAACAAACGGGTCAGTATAATAAAATCAATGCTGGACTCCATGGAAGATGGAGAAATCAATGCC TCAGCATACGACACAGCCTGGGTGGCTTTGGTTAAAGACGTGAACGGCAGCTGCGGTCCCCAATTCCCCGAAAGCCTCGATTGGATTGCCAATAATCAGC TCGACGATGGCTCCTGGGGCGACGTCGAGCTTTTCCAGGCTCACGATCGCCTCCTCAACACTCTAGGATGCATCGTGGCCCTCACTACCTGGAACTTACA TCCCGACAAATGCGCTAGAGGGATGAAGTTCTTTAACGAGAATCTGAAAAAGCTAGAGGATGAGAACATGGAACACATGCCGATTGGGTTCGAAGTGGCT TTCCCTTCGCTTCTCGAGCTGGCTCGTACCTTGAACCTCGACGTCAACCATGATTCCCCAGTTCTCCAGGAGATCTATGCCGCCAGAAAAATCAAGCTCA ACAAGATCCCAAAAGAAGTCCTGCACAACTACCCCACCACTCTACTCCATAGCTTGGAAGGATTGCCGGATCTGGACTGGGATAAGCTTCTGAAGTTGCA GAGTGAAGATGGGTCTTTCTTGTTTTCTCCTGCTGCAACTGCTTGTGCTTTGGCTCAGACCAATGATCAAAAGTGCTTGGGGTATCTAAGCAAGATGGTC CAGAAATTCAGAGGAGGAGTTCCGAACGTTTACCCGGTTGATCTGTTTGAGAACATATGGGCAATCGATCGGTTGCAGCGACTTGGAATTTCCAGATATT TCCAGCCAGAGATTACTAAATGTGTCGACTACATTGAAAAATATTGGGATGAGAGGGGTATCTGCTGGGCAAGAAACTCGGAGGTGCATGACATTGACGA CACTGCTATGGGATTCAGGATTCTGAGAACTCACGGCCGTAAAGTTTCTCCAGATGTGTTCAAGTACTTTGAGAAGAACGGAGAGTTCTTCTGCTTCGCC GGACAGTCAAACCAGGCGATTACCGGTCTTTTCAACTTGTACAGAGCATCTCAGGTGTTGTTCCCAGGGGAGGAAATCCTGGAGAACGCGAAACAATACG CTTACAAGTTCCTCAAGGAGAAGCAGGCTTCCGACGAGCTCCTTGACAAATGGATCATTACCAAGGACTTGCCCGGAGAGGTCGGACTTGCATTGGATGT CCCCTTTTATGCGAGTTTGCCTAGAGTTGAGAGCAGGTTCTTCATCGAACAGTATGGCGGCGAAGACGATGTCTGGATCGGAAAAACTCTTTACAGGATG CCTATTGTAAACAATAACTACTACTTGGAGCTAGCCAAGATTGACTACAACAATTGCCAAACAATCCACCGTATGGAATGGGAAAATCTTCAACAATGGT ACGAGGAAAGTGGAGTGGGAGAATTTGGGGTGAGCAAAAGGAGCCTGCTGCAAGGGTACTACATGGCGGCGGCCAGCGTGTACGAGCAGGACAGGTCAGC AGAGAGAATGGCGTGGGCCAAGACTTCTGCCTTGCTGGAAGCGATCCAGTCATACTTCAACGTCGACAAGTCAAAGGAGGCTCGCGCAGCTTTCGTCCAC GAGTTCAGCCACGGGATAGGGATCCGGTCGTGGAGCAGTAGTAAAAAGACGACAACTAGGCAGGATCTGGTGAAACTATTATTGGGCACGCTAAACCACA TTTCTCTGGACGCACTCGTGGCTAACGGACGCGACATCGGCCAAGCCCTCCGCCGATCCTGGGAAGAATGGATGGTGAAATGGGAAGAGGAAGGAGACAG AGGAGTTGGGGAGGCAGAGCTTGTGGTGAAGACACTGAACTTGGCAGCTGGGCGTTTGAGTTCCGAGGAGTTTATGATTCTAGCCACTACTGAAGAAGAA GATAACTCTCTGTATCACAAGCTTGCAAACCTGACCAATAACATCTGCCACCAACTTATCCATTTCAAGGACTCAAAGGAGGACGAGGACAAAACCCGGA ATCTGAATACTACAACGCCAGAGATAGAGAGTGGGATGCAGGAGTTGGTCCGTTTGGTGACTCAAACGCCGTCAGATGGCAATGATGATTTGAAGCAGAG GTTCATGGACGTGGTCAAGACATTCTACTACTCTGCCGTTTGTGAACCTGGAACCGTCAACCACCACATTGCCAAAGTCCTGTTTGAGAGAGTTCATTAA
AA sequence Show only first row Show all	>Lus10022047 pacid=23160263 polypeptide=Lus10022047 locus=Lus10022047.g ID=Lus10022047.BGIv1.0 annot-version=v1.0 MVSVRIVCPLAGCAWLNSATKDKKVRSDVRARCVVSKSRTQEYEADVFQQNGSPVIKWHDIVEDDIEQETLKVSVSSEINKRVSIIKSMLDSMEDGEINA SAYDTAWVALVKDVNGSCGPQFPESLDWIANNQLDDGSWGDVELFQAHDRLLNTLGCIVALTTWNLHPDKCARGMKFFNENLKKLEDENMEHMPIGFEVA FPSLLELARTLNLDVNHDSPVLQEIYAARKIKLNKIPKEVLHNYPTTLLHSLEGLPDLDWDKLLKLQSEDGSFLFSPAATACALAQTNDQKCLGYLSKMV QKFRGGVPNVYPVDLFENIWAIDRLQRLGISRYFQPEITKCVDYIEKYWDERGICWARNSEVHDIDDTAMGFRILRTHGRKVSPDVFKYFEKNGEFFCFA GQSNQAITGLFNLYRASQVLFPGEEILENAKQYAYKFLKEKQASDELLDKWIITKDLPGEVGLALDVPFYASLPRVESRFFIEQYGGEDDVWIGKTLYRM PIVNNNYYLELAKIDYNNCQTIHRMEWENLQQWYEESGVGEFGVSKRSLLQGYYMAAASVYEQDRSAERMAWAKTSALLEAIQSYFNVDKSKEARAAFVH EFSHGIGIRSWSSSKKTTTRQDLVKLLLGTLNHISLDALVANGRDIGQALRRSWEEWMVKWEEEGDRGVGEAELVVKTLNLAAGRLSSEEFMILATTEEE DNSLYHKLANLTNNICHQLIHFKDSKEDEDKTRNLNTTTPEIESGMQELVRLVTQTPSDGNDDLKQRFMDVVKTFYYSAVCEPGTVNHHIAKVLFERVH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10022047 [exp]	0	1
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10005858 [exp]	1.7	0.9942
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10024120 [exp]	2.0	0.9940
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Lus10036014 [exp]	2.8	0.9876
					Lus10002336 [exp]	3.3	0.9868
AT4G19880			Glutathione S-transferase fami...		Lus10014304 [exp]	3.5	0.9907
AT4G02780		ATCPS1, ABC33, ...	GA REQUIRING 1, CPP synthase, ...		Lus10042593 [exp]	4.5	0.9874
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10001322 [exp]	5.5	0.9932
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10006984 [exp]	6.0	0.9921
					Lus10003173 [exp]	8.5	0.9830
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Lus10019461 [exp]	8.7	0.9917

Compare expression of checked genes

Lus10022047 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.