Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03150 333 / 6e-119 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) AT5G13780 96 / 7e-25 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042595 [exp] 347 / 3e-124 AT1G03150 348 / 6e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Lus10016378 [exp] 91 / 6e-23 AT5G13780 292 / 5e-102 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210400 [exp] 332 / 2e-118 AT1G03150 350 / 2e-125 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.002G052000 [exp] 271 / 6e-95 AT1G03150 287 / 4e-101 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.009G056600 [exp] 96 / 4e-25 AT5G13780 307 / 5e-108 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.001G261800 [exp] 91 / 2e-23 AT5G13780 301 / 8e-106 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1) Potri.006G142100 [exp] 44 / 3e-05 AT2G06025 347 / 1e-120 Acyl-CoA N-acyltransferases (NAT) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0257 [flax] [poplar] Acetyltrans PF00583 [flax] [poplar] Acetyltransf_1 Acetyltransferase (GNAT) family
Representative CDS sequence Show only first row Show all	>Lus10022048 pacid=23160243 polypeptide=Lus10022048 locus=Lus10022048.g ID=Lus10022048.BGIv1.0 annot-version=v1.0 ATGACGACGATAAAGCGCTTCTGCTGCAGCGACCTTCTCCGATTCGCTTCCGTCAACCTCGACCATCTCACCGAAACCTTCAACATGTCATTTTACATGA CCTACTTGGCGAGATGGCCTGATTATTTCCACGTCGCCGATGCCCCTGGCAACAAAGTCATGGGATACATTATGGGAAAAGTAGAAGGACGAGGCGAATC GTGGCATGGTCACGTGACGGCGGTTACGGAGTCCCGCCGGCAGCAATTGGCCAAGAAGCTTATGAACCTTCTTGAGGATATCAGCGACAAGATTGACAAG GGTTACTTTGTGGATCTTTTTGTGAGAGCATCCAATACACCAGCCATCAAGATGTATGAGAAGCTTGGATATGTAATTTACAGAAGGGTTCTCCGGTACT ACTCTGGAGAGGAAGATGGCTTAGATATGAGGAAAGCTCTTTCTCGTGACGTGGAGAAGAAATCGATTATCCCTCTTAAGCGACCGATTACTCCTGATGA GTTAGAGTACGATTAA
AA sequence Show only first row Show all	>Lus10022048 pacid=23160243 polypeptide=Lus10022048 locus=Lus10022048.g ID=Lus10022048.BGIv1.0 annot-version=v1.0 MTTIKRFCCSDLLRFASVNLDHLTETFNMSFYMTYLARWPDYFHVADAPGNKVMGYIMGKVEGRGESWHGHVTAVTESRRQQLAKKLMNLLEDISDKIDK GYFVDLFVRASNTPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSRDVEKKSIIPLKRPITPDELEYD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10022048 [exp]	0	1
AT1G03150			Acyl-CoA N-acyltransferases (N...		Lus10042595 [exp]	1.0	0.8703
AT5G37475			Translation initiation factor ...		Lus10008317 [exp]	2.0	0.8209
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Lus10003632 [exp]	2.0	0.8354
AT5G27470			seryl-tRNA synthetase / serine...		Lus10010211 [exp]	3.9	0.8220
AT5G49540			Rab5-interacting family protei...		Lus10016182 [exp]	4.9	0.7841
AT2G19080			metaxin-related (.1)		Lus10015535 [exp]	5.9	0.7975
AT1G08390			unknown protein		Lus10038152 [exp]	6.0	0.7957
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Lus10009294 [exp]	6.3	0.7968
AT5G05780		RPN8A, AE3, ATH...	ASYMMETRIC LEAVES ENHANCER 3, ...		Lus10035522 [exp]	11.3	0.7780
AT1G04190		TPR3	tetratricopeptide repeat 3, Te...		Lus10021905 [exp]	12.2	0.7906

Compare expression of checked genes

Lus10022048 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.