Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03140 499 / 9e-177 splicing factor Prp18 family protein (.1) AT1G54590 334 / 2e-112 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042599 [exp] 624 / 0 AT1G03140 467 / 3e-164 splicing factor Prp18 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G210600 [exp] 565 / 0 AT1G03140 518 / 0.0 splicing factor Prp18 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02840 [flax] [poplar] Prp18 Prp18 domain PF08799 [flax] [poplar] PRP4 pre-mRNA processing factor 4 (PRP4) like
Representative CDS sequence Show only first row Show all	>Lus10022049 pacid=23160232 polypeptide=Lus10022049 locus=Lus10022049.g ID=Lus10022049.BGIv1.0 annot-version=v1.0 ATGGACGCCATCAAACAAGAGCTCCTCCGGAAACGCCAAACCCTAGCCCAAGAAACCGGCGGTAGGCGCTTCTTCAAGCGCTCCGAGATCGAGAAGAAGG AAATCCAGAAGCTCCGCGAACAGGAGAAGCGCGAGCTCGAAGCTAAAGCCGCACGAAAATCCGCCAATACCGATTCAAAATCGGGAGAGCCTCCTAATTC CGTGCCTTCCTCCTCCTCCTCCGCCGCCGTGGTCGCCAGCACGGCCCCAGTCTCCGCCTCCACGGGGTCCAAATCCCTAACCAACGAACAAAATATCGAG AACCTCGACCTACCTAGACAGGAAGTCATCCGCCGGCTCCGGTTCCTGAAACAGCCTATCACTCTCTTCGGCGAGGACGACGACTCCAGGTTGGATCGTT TGAAGTATGTGTTGAAAGCGGGACTGTTCGAGGTCGATAGCGACATGACGGAAGGGCAGACGAATGATTTCTTGCGTGATATTGCCGAGCTGAAGAAGCG GCAGAAGAGCGGGATTCCGAGCGAGAGGAAGCGCAAGGATAGGCAAGGAGGAGGAGGCGGTGAGGACGGGGAAGGAGGCAAAGGAGAAGGTGAGCTGAGT GGGGATGGTGGATCGAGCGGGCTGGAGACGGACAAGGATGTGAAACGGATGAAAGCCAATTTCGATGATTTGTGCGATGAAGACAAGATTTTGGTGTTCT TCAAAAGGCTGCTGAATGAGTGGCACCAGGAGTTGGATGAGATGCCGGATTCTGAGAAGCGTACTGCTAAGGGGAAGTCGATGGTCGCGACGTTTAAACA GTGTGCTAGGTACTTGAGTCCTTTGTTCAAGTTCTGCAGGAAGAAGGTTCTCGGGAACGATATCTGCCGAGCATTGATGATCATGGTCAACTTCTGCATG GAACGAGACTACCTTGCGGCGATGGATCACTACATCAAACTGGCAATAGGGAATGCGCCCTGGCCTATTGGTGTTACTATGGTTGGTATCCACGAACGTT CAGCTCGCGAGAAGATCTACACCAACAGTGTGGCTCACATCATGAACGACGAGACTACCCGTAAGTATCTGCAGTCGGTAAAGAGGCTGATGACCTTCTG CCAACGGCGGTACCCTACCGCACCATCAAAGGCTGTGGAGTTCAACAGCTTGGCAAACGGCAGCGACTTGCACTCGTTGTTGGCAGAGGAGGCGCGATTG AACCCGCCTTCGGAGAGTCGATTGAGGCTAATGCCTGCGCCTGCTGACAATTAA
AA sequence Show only first row Show all	>Lus10022049 pacid=23160232 polypeptide=Lus10022049 locus=Lus10022049.g ID=Lus10022049.BGIv1.0 annot-version=v1.0 MDAIKQELLRKRQTLAQETGGRRFFKRSEIEKKEIQKLREQEKRELEAKAARKSANTDSKSGEPPNSVPSSSSSAAVVASTAPVSASTGSKSLTNEQNIE NLDLPRQEVIRRLRFLKQPITLFGEDDDSRLDRLKYVLKAGLFEVDSDMTEGQTNDFLRDIAELKKRQKSGIPSERKRKDRQGGGGGEDGEGGKGEGELS GDGGSSGLETDKDVKRMKANFDDLCDEDKILVFFKRLLNEWHQELDEMPDSEKRTAKGKSMVATFKQCARYLSPLFKFCRKKVLGNDICRALMIMVNFCM ERDYLAAMDHYIKLAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHIMNDETTRKYLQSVKRLMTFCQRRYPTAPSKAVEFNSLANGSDLHSLLAEEARL NPPSESRLRLMPAPADN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G03140			splicing factor Prp18 family p...		Lus10022049 [exp]	0	1
AT1G03140			splicing factor Prp18 family p...		Lus10042599 [exp]	2.0	0.8899
AT1G63850			BTB/POZ domain-containing prot...		Lus10040458 [exp]	2.4	0.8860
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	4.0	0.8083
AT2G40810		ATATG18C	homolog of yeast autophagy 18C...		Lus10003694 [exp]	8.0	0.7898
AT3G06240			F-box family protein (.1)		Lus10038603 [exp]	9.8	0.7606
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Lus10020376 [exp]	10.5	0.8208
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Lus10041766 [exp]	11.2	0.8273
AT1G67340			HCP-like superfamily protein w...		Lus10037021 [exp]	11.5	0.8011
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10027883 [exp]	11.6	0.8080
AT4G01000			Ubiquitin-like superfamily pro...		Lus10012629 [exp]	13.4	0.8210

Compare expression of checked genes

Lus10022049 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.